Ammodytes marinus (lesser sand-eel): 307262398
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Entry
307262398 CDS
T12006
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm04514
Cell adhesion molecule (CAM) interaction
ammm04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
307262398 (lrrc4ba)
04517 IgSF CAM signaling
307262398 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ammm04515
]
307262398 (lrrc4ba)
Cell adhesion molecules [BR:
ammm04515
]
Immunoglobulin superfamily
NGL family
307262398 (lrrc4ba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_14
ig
LRR_1
V-set
LRR_9
Ig_2
LRRNT
VEGFR1-3_N_Ig-like
Ig_6
Motif
Other DBs
NCBI-GeneID:
307262398
NCBI-ProteinID:
XP_079899391
LinkDB
All DBs
Position
16:complement(<6533960..6541179)
Genome browser
AA seq
737 aa
AA seq
DB search
MRIATLTCLPGDAPLLLLLAQLLLRLLPSGPGLLGAAASSSACPSLCTCSNQASRVICTR
QSLDQVPESISINTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLP
NLNTLELFDNRLTLVPSHAFEYLSKLRELSLPGYAFHRVPSLRRLDLGELKKLDFISDAA
FVGLVNLRYLNLGMCGLKDIPKLTALVRLEELELSGNKLEIIRPGSFQGLVSLRKLWLMH
SQVSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWICNCDVLWL
SWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAE
LKCRTSTSTTSVNWITPNGTLMTHGSYKVRISVLHDGTLNFTNVTLRDTGQYTCMVTNAA
GNTTATAVLNVTAADAMSVNYTYFTTVTVETVETTGEEEGALVAINETFIRLHPGPTPSG
HLWPEGVSTTASSLSGGWSSSSPRATRPTFTVPITEPGFSGLDDVMKTTKIIIGCFVAIT
FMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAAGANSRGGSGISGGSTMSQG
GSSGLGGGQSLRLHHPEIVNLPNLARSEHLNHYYKAHHFNNNMMSLGMGPGSGMGLNNNN
NPSPCSQQAQNISCSQVPTSTGGGGGMCSGGGTLPSQMGTLPQLGLHSSLKGLMGKSQNE
PLLFKSGSKENVQETQI
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgctgacctgcctgcccggcgacgcccccctcctcttgctattggct
cagctgctcctgaggctcctcccctctgggcctgggctgctgggggccgcagcctcgtcc
tccgcctgcccctccctctgcacctgctccaaccaggcctcacgagtcatctgcacccgc
cagagcctcgaccaggtgcccgagagcatctccatcaacacacgctacctcaacctgcag
gagaactccatacaggtcatcaaatcggacacattcaagcacttgcggcacctcgagatc
ctccagctgtccaagaaccagatccgtcagatcgaagtcggtgcgttcaatggcctcccc
aacctcaacacgctggagctgttcgacaaccggctcacgctggtgccgtcccacgccttc
gagtacctcagcaaactgcgcgagctctctttgccgggctacgccttccaccgcgtgccc
tcgctccggcgcctggacctcggcgagctcaagaagttggacttcatctccgacgcggcg
ttcgtgggcctcgtcaacctgcgctacctgaacctgggcatgtgcgggctgaaggacatc
cccaaactgacggccctggtgcgtttggaggagctggagctgtccggaaacaagctggag
atcatccgaccgggttccttccagggcttggtgtcgctccgcaagctgtggctgatgcac
tcgcaggtgtcggtcatcgagcgcaacgccttcgacgacctgaagagcctggaggagctc
aacctgtcccacaactctctgcactctctgccccacgacctcttcacccccttgcaccag
ctggagagggtccacctcaaccacaacccctggatctgcaactgtgacgtgctctggctg
agctggtggcttaaagagacggtgcctagtaacaccacctgctgcgcccgttgccatgcg
ccccccttcttaaaggggaagtacatcggagagctggaccagagccacttcacctgctac
gcgccggtgatagtcgagccgcccaccgacctgaacgtgaccgagggaatggcggccgaa
ctcaagtgtcgcaccagcacctccacgacatccgtcaactggatcacgcccaacgggacc
ctgatgacccacggctcctacaaggtgcggatctctgtcctgcacgacggcacgctcaac
ttcaccaacgtcacgctgcgggacacgggccagtacacctgcatggttaccaacgccgcc
ggcaacaccacggcaacggcggtcctgaatgtaaccgcggccgacgccatgagtgtcaac
tacacctacttcaccacagtcaccgtggaaacagtggagaccacgggagaggaggaggga
gcgctggtggccataaacgagacgttcatacgacttcatccgggccccacgccgtcaggc
cacctctggccagaaggtgtttccaccacggcttcctccctgtctggcggctggtcctcg
tcctctccgcgcgccacccgtcccaccttcaccgtgcccatcacggagccgggcttctcg
ggcctggacgacgtcatgaagaccaccaagatcatcattggctgcttcgtggccatcacc
ttcatggccgcggtgatgttggtggtcttctacaagctccggaagcaacaccagctccac
aagcaccacggtcccgcccgcgccatcgagatcatcaacgtggaggatgaactgggcgct
gctggggccaacagtcgaggtgggagtgggatctctggaggctccaccatgtcccagggc
ggcagcagtggattgggagggggccagagtctgaggttgcaccacccggagatcgtcaac
ttgccgaacctggcccgatcggagcatctcaaccactactacaaggcccatcacttcaac
aacaacatgatgagcttaggaatgggccctggttctggaatgggtttaaacaacaacaac
aacccgtcgccgtgctcgcagcaggcccagaacatttcgtgttcccaggtacccacctct
accggcggaggaggggggatgtgttcaggaggaggcaccctaccgtcccagatgggcacc
ctgccccagctgggccttcacagctctctgaaaggcctcatggggaaaagccagaacgag
ccgctgcttttcaagagcggctccaaggaaaacgtgcaagagactcagatttga
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