Ammodytes marinus (lesser sand-eel): 307262448
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Entry
307262448 CDS
T12006
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ammm
Ammodytes marinus (lesser sand-eel)
Pathway
ammm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307262448 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ammm03041
]
307262448 (ddx42)
Enzymes [BR:
ammm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
307262448 (ddx42)
Spliceosome [BR:
ammm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
307262448 (ddx42)
Complex B
307262448 (ddx42)
Complex C
U2 SnRNP specific factors
307262448 (ddx42)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
307262448
NCBI-ProteinID:
XP_079899457
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All DBs
Position
16:13126885..13138664
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AA seq
902 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLEKGRKEEGPPPPKSQTSFAPTGSTGAYGKNQQLPSFYKI
GTKRANFDEENAYFEDDEEESSNNMDLPYIPAENSPTRQQMKSGGGSDSEDDPLDAFMAE
VEDQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEDEDENID
YDSDGNPIAPTTKKIILPLPPLDHSEIDYPPFEKNFYNEHEELAILNESQVFDLKHKLNL
RVSGAAPPKPATSFAHFSFDEQLMHQIRKSEYTKPTPIQCQGVPIALSGRDMIGIAKTGS
GKTAAFIWPMLVHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQV
RSIGSHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVEMLPGG
ADKWSWLTRRLVEFTSSGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVI
TDFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTNKDTSFAGDLVRNLEGANQSVTKELMDLAMQNPWFRKSRFKSGKGKKLNIGGGGLGYK
ERPGLGAESSERGSMLSSSSSYEGYSKPTSGAMGDRMNAMKSAFQAQYKSHFVAAASGAP
KLSTKSSSNSCWTSGGSLSSVPTEAANNGLQRPQSVSMTMPGFTSAGSLSSVPQSPPAVS
QPAPPSPRDRHGDADRGRHGDRDRERHSDRSERHSGGEDRYGDRDRHGDRDRDRHGDRDR
HSSSGSSRHGDSRNGDGSKRERDERRSEREGGDKGSEEGREGEDDSFAVPEPPKRRKSRW
DN
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccgggtgtcaagcgaggctttgggttcggaggtttttcg
cttgaaaaaggaagaaaagaggaaggtccacctccacccaaatctcaaacctcattcgca
cccacaggatcgactggtgcatacgggaagaaccagcagctcccatcgttctacaaaatc
gggacaaaaagagctaattttgatgaggaaaatgcctatttcgaggatgatgaagaggag
tccagcaacaatatggatctgccgtacatcccggctgagaactctcccacacgacaacag
atgaagtctggtggaggttcagacagtgaagacgacccactggatgccttcatggcagag
gttgaggaccaagcagctaaggacatgaggaaattagaagaaaaggaaaaggagaaaaag
tcagccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgc
tacatggcagagaatcccacagctggcctgacactagaagatgaggacgagaacattgac
tatgacagtgacgggaacccgatcgctcccacaaccaagaaaatcatcttgccattgcct
ccccttgatcactctgagattgattacccgccctttgagaaaaacttctacaatgagcat
gaagagctagccatcctgaatgaaagtcaagtgtttgatttaaagcacaaactgaacttg
agggtatctggcgctgcccctccaaaacctgcgactagttttgcccacttcagctttgac
gagcagctaatgcaccaaatccgcaagtctgaatacactaagcccacacctattcagtgc
cagggtgtgcccatagctctctctggacgtgacatgattggtattgccaaaactggcagt
ggaaaaactgcagcatttatctggcccatgctggttcacatcatggaccaaaaggaactg
gagccaggagacgggcccattgcagtcattgtgtgtcccaccagagagctttgtcagcag
atccatgctgaatgtaagcgttttgggaaagcttactcgttgcgttctgtggcggtttat
ggaggaggcagcatgtgggagcaggccaaagctctgcaggagggagctgagatcgtggtg
tgcactccgggtcgtctgattgaccacgttaaaaagaaggccacgtccctacagagagtc
tcatacctggtgtttgatgaggcggatcgcatgtttgatatgggttttgaatatcaggtt
agatctattggaagccacgtccgcccagacagacaaacccttctgttcagcgctactttc
cgaaagaagattgagaggctggccagggacatcttaattgatcctattcgtgtggtgcag
ggagacatcggagaggccaacgaggatgtgactcaggtggtggagatgcttcccggcggg
gcagataagtggagctggttgacccggcgcctggtggagttcacctcctccggctccgtg
ctcatcttcgtcactaagaaagcaaactgtgaggagctggccaccaacctcaaccaggag
ggctacagcctgggcctgttgcacggagacatggaccagagcgagaggaacaaggtcatc
accgacttcaagaagaagagcttacctgttctggtggccactgatgtcgctgcccgtggt
ttggacatcccatccattcgcacagtggtgaactatgacgtggcccgagacatcgacacg
cacacacacaggatcggtcgaaccggtcgcgctggagagaaaggtgtggcttacactcta
ctcaccaacaaagacacctcattcgctggtgacctcgtgagaaatctagagggagccaat
caatcagttaccaaagaattgatggacttggcaatgcagaatccctggttcagaaagtcc
cgtttcaagagcggtaaaggaaagaagctgaatattggcggaggtggccttggttacaaa
gagagaccaggactgggggcagaaagttctgagcgcggcagcatgttgtcttcctctagt
agctatgaaggttacagcaaaccaacctctggggcgatgggagatcgcatgaacgccatg
aaatcagccttccaggcccagtataagagtcactttgtggcggcggccagcggcgctccc
aagctcagcaccaagtccagcagtaactcgtgttggaccagcggcggcagcctgagctcc
gtgccgacggaggctgcaaacaacggtttgcagcggccccaaagcgtctccatgacgatg
cccggcttcaccagcgctggctctctcagctccgtgccccagagtccaccagccgtctca
cagcccgcccctccctcgcctagagacagacacggagacgcagaccggggtcgccacgga
gacagggatcgcgagcgccatagcgacaggagcgagcgccacagcggaggagaggatcgc
tacggagaccgagatcgtcacggagacagggatcgggatcgtcacggggaccgggatcgc
cacagcagcagcggcagcagtcgccacggtgatagtcgtaacggagatggaagcaagaga
gagagggatgagcggaggagtgagagagaggggggagacaagggcagtgaggaggggagg
gagggggaagatgatagcttcgctgttccagaaccaccaaaacgtagaaagagcaggtgg
gacaactaa
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