Ammodytes marinus (lesser sand-eel): 307264651
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Entry
307264651 CDS
T12006
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307264651 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307264651 (skic2)
Enzymes [BR:
ammm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
307264651 (skic2)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
307264651 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
307264651 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
ResIII
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
307264651
NCBI-ProteinID:
XP_079902234
LinkDB
All DBs
Position
17:8899539..8914983
Genome browser
AA seq
1245 aa
AA seq
DB search
MERIIVPPAGPMDLPLSLLEMGCSGRFELITHPMPGQPLPPQSTLPHGLPPTSLSLETEV
EKQFLRDPSWLPIHDTDFAFQKFLKVSQRDVKVDSLLNCTPSSLHSGLSVVRDPTTGMLL
DFTEVLLEDTGLSAKNSLSLHRQPGPPSESLRGSNTNYPFLPGGMEELSLDQIKKKSELE
EDIDFEKDLLQVPPGLKAGMDFTDKEAKIAKAEVNLLSLLSTMDDITVLQPEEEEKEESK
GNKEAPKLPRTNSLEDLGIKDTVSSSPHPEKGKDDKSKPKEKPADDKKWAIPVNISSPCD
DFYKRIPNPAFKWPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQISPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDPVGNFLTKGYYAAIDAKKERTSKHSQ
SFGTKNTSHNTSASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGADRQLPQILLMRDLLKRGVAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSENH
RDTQAHEKRISQLKQMVSSLPAPDTDGQLSDMLSYYHTVTELRTTTAALQRAILESVNGL
KALSVGRVVLVNNKQHLNALGVILQVSSASVNRTFTALVLCEKGNEEAEGQGTNNAFPHL
FNRALFIPEGPCSHTVQKLKLEDISAITVKTLKVIPDRIIDNYSKRQQPRFRLDPPGQAI
STATQELLRLAEASAAGIASLDPVNDLKLSSVDVVEGTMRHRVLQDSLQEFNCIHSPTFA
EQFARVQERMKIQEELDTLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSGGAVQLKGRVA
CQISSHELLLTELLFENVLSPLAPEESAALLSCLVFQQKTQVEPHITSTLQEGIDKVLSV
AKRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCIQ
RLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaataattgtgcccccggcgggccccatggacctgccgctgtccctgctggag
atgggatgctccggcaggtttgagctcatcacacaccccatgcccgggcagcctttacct
ccacagagcacgctcccccatgggctcccccccaccagcctcagcctggagacagaagtg
gagaaacagtttttacgggacccttcctggcttcccatacacgacacagactttgccttc
cagaaatttctcaaagtgagtcagagagatgtcaaggtggactctctgcttaactgcacc
ccgtcttcacttcactccggtctctctgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttactggaagacactggcctgtcagcaaagaactccctttcactt
catcgccaacccgggcctccttcagagagcctccggggaagcaacaccaactaccccttc
ctccccggaggaatggaggagcttagtctggaccaaatcaagaagaaatctgagctggag
gaggatatagactttgagaaagatttactccaagtgccacctggacttaaagctgggatg
gacttcactgacaaagaagccaagatagcaaaggcagaggtcaacctcttgtctctcctg
tccactatggatgacatcaccgtcttgcagcctgaggaagaggagaaagaggaaagcaaa
ggaaataaagaagctcctaaactacccagaacaaacagccttgaagaccttggcatcaag
gacactgtgtcatcatctcctcacccggagaaaggaaaagatgacaaatcgaagcctaaa
gagaagccagcggacgataagaaatgggccatccccgtcaacatatcgtcaccctgcgat
gatttctataaacgcatccccaacccagctttcaagtggccctttgaactggatgttttc
cagaagcaggccattctgaggctggaggctcacgactcagtgtttgtagccgcgcacact
tcagccggcaaaacagtggtggctgaatacgccatcgccctctcacagaaacacatgaca
aggaccatctacacctcccccatcaaagccttatccaatcagaagttccgagactttaaa
accacctttggagacgtgggactgctgacgggcgacgtccagatcagtcctgaatcttca
tgtctcatcatgaccacagagatcctcaggtctatgctttacaacggctcagaggtcatc
agagacttggagtgggtgatctttgatgaggttcactacatcaacgatgctgagagaggg
gtcgtgtgggaggaggttttgatcatgcttcctgatcacgtcagtatcattctccttagc
gccaccgtgccgaatgctgtggagtttagtgagtggatcggtcgtataaagaagaggcat
atttacgtgatcagcacaatgaagagacctgtgcctctggagcattatctgtacacagga
aacagcaccaagactcagaaagagatgttcctgctggtggatcctgttggcaacttcctc
actaaagggtactacgcagctatcgatgccaagaaggagcgcaccagcaagcactctcaa
tcatttggtacgaagaatacttcccacaacacctcagctagtcaggaccgatcggtgtgg
ctcaccctcctacacttcctgtcccagcggcagcagacgcccgttgttgcgttcacgttt
tcgcgaacgcgctgcgacgacaatgcccgttctctggactccatggacatgaccacctcc
atagagaaggctgagatccactccttcttccagaagagcctgagtcgcctccgaggggca
gacaggcaacttccgcagatcttgctcatgagggacctgttgaagaggggagtagccgtc
catcatagcgggatcctgccaatcctgaaggaagtcattgagatgcttttctctcgagga
ctcgtgaaggtactgtttgccaccgagacgtttgcaatgggagtgaacatgcccgccagg
accgtggtattcgacagcatcaggaaacacgacgggaccggcttcagaaatctcctgcca
ggcgagtatattcagatggcgggcagagccggtaggagaggcctggacgccacgggcacc
gtcatcattctgtgtaaggctggcgttcacgaaatggcagatctgcatgtcatgatgctg
ggtaagccgaccgtcctccagtcccagttcagactgacctacaccatgatcctcaacctg
ctgcgagtggaagccctgcgtgtgaccgacatgatgaggaggagcttctctgaaaaccac
agggacactcaggcccatgagaagaggatcagtcagctgaagcagatggtttcctccctg
cctgctccggacactgatggccagctgtcagacatgttgtcttactaccacacggtgaca
gagctacgaaccactaccgcggccctacagcgagctattctggagtctgtgaatgggctg
aaagctctgtctgtgggtcgagttgtgctggttaacaacaagcagcatctcaacgcgctg
ggtgttatcctacaggtgtccagtgcctcagtgaatcgcaccttcaccgctctcgtcctc
tgtgagaagggcaacgaggaagcggaaggccaaggcaccaacaatgctttccctcacctc
ttcaatagggctctcttcatccctgagggcccttgcagccacacggttcaaaagttaaag
cttgaggatatctcagccatcacagtgaaaacccttaaagtgattccagacaggatcatc
gacaactacagcaagaggcagcagccacgattcaggctcgaccctcctggccaagccata
tccacggcgacccaggagctcctgcgattggccgaggccagcgccgcgggcatcgcgagc
cttgaccccgtgaacgacctcaagctgagcagcgtggacgtggtggagggcaccatgagg
caccgcgtgctgcaagacagcctccaagagttcaactgcatccactcgcccactttcgca
gagcagtttgctcgggttcaggagaggatgaaaatacaggaggagctggacacgctgctg
ttcctggtgtcggaccagtctctgtccctgctgcctgagtaccaccagaggatcaaggtg
ctgcagtccctccagtatgtagacagtggcggtgctgtgcagctgaaaggccgcgtggcg
tgtcagatcagtagccatgagctgctgctgaccgagctgctgtttgagaacgtcctgagc
ccactagcaccagaggagagcgccgccctgctgtcctgtctggtcttccagcagaaaaca
caggtggagccgcacattaccagcacactgcaggagggcatcgacaaggtgctttcggtt
gccaagcgtatcggagagctgcaaagggattgtgggataccgcagactgccgaggagttt
gttggccagttcaagttcggcctgacggaggtggtgtactgctgggccagaggcatgccc
tttgctgagattgcccagctgacagacgtgcaggagggcacggtggtgcgctgcatccag
cgcctggacgaggtgttgaaggaggtgagacaggccgcccgcatcgtgggagactcggtc
ctgggcagcaagatggagaaggcctcgctagccatccgtagggacatcgtcttcactgcc
tccctctacacccactga
DBGET
integrated database retrieval system
