Ammodytes marinus (lesser sand-eel): 307268105
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Entry
307268105 CDS
T12006
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307268105 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307268105 (skic3)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
307268105 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_8
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_9
CFAP70_TPR_C
CFAP70_mid_TPR
TTC22_N
CABIN1_N
ANAPC3
Fis1_TPR_C
TPR_Psidin_N
TPR_15
TPR_MalT
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
307268105
NCBI-ProteinID:
XP_079906750
LinkDB
All DBs
Position
2:14472451..14488895
Genome browser
AA seq
1567 aa
AA seq
DB search
MSCKEVKTALKSAREAIKNKEFKEALKHCKAVLKIEKNNYNAWVFIGLAASELEQPDQSQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFQVELPNIYEKLVELYASSDKSKCYEVIK
KLTDIYQSDKEYLKLSKVWLQLIQLKEEEAVDKKELLQLWQQMTQLLSDQEQQDNETQQH
LITAFEKSMTLMDPVPGEEHKKVSADYVKCLSERPQEEAKMIEACESMLSIYPNQMYPLE
VLCSHYLKKGVQSEDAASCFSRLLNLAPTNGLGHLGLGTKALQEGRYMDAIRDLSHGLKK
INSGTGWCSLAEAQFKMHRYSDSAVSCSQGLTVCVSGDEELRVKLFRLKLEALVKSGGEK
AAEQALETFAQIPNAGKDTVLVALKGQAYLNKGQADEALKVSSELVATNPDLSQGFVLRG
LAQMAQGQLQLAEESFLKATSQSPDCGEYYFLLGKLYWDMGEETRKDRSKAHTHLLKAAK
LDPQLGCVFRYLGHYYREVANDHGRARGCFKKAFELDNEDAESGAASVDLSMEQDDMDTA
LAILQSVIEKATPGSAKWAWMRRGLYHLKVGEHQQATADLQAALRADPEDWVCWECLGEA
YLNRRSFTAALKAFGKAHQLHPSSIYSVYQAAAIKQTLGKFKEAVAEYVQITTVQDYVPA
LKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIQNLFRAVELRPDLSCLWKLLGDACTAVS
AVSANRAQVVVPAQLAGLDPNTQSHTLNQAQTLKVGERCYGRALKMMSEVPGLWYDLGLN
YYHQSRLSCPTEGEQNSPSLLLEKAQQCLKKAIMMDSGNYSYWNALGVISMSKGLENFPL
AQHCFIKSVQVEPNNVVAWTNLGTLYLKKDNIELSHEAFKIAQSLEPLYVNCWIGQALIA
ERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNATSAA
QVSLSKYTERIQSDPDAFIMLGYLNEHLQLKRQALQAYQRAVELLQSMSSTEELAFALGS
YGRALCTSGQWEEAVHVYKSTPLQELSDLVGLALAYCRAGLIPESTNAYERALAVAPSEK
EKAYILTALAMLQHRQGNLDSAKTLLFKCSMLKEPIAESLLCLCALGLVHSDAMLATAAL
TELLKQGSATGNVVEQRCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSRVVP
QYYPSKADGGAMAGHVACLSSMTLGKRALLYSGVNQLASGRHSGEDSHRNALKTMQRAVL
LCPDDPATWAGLMAACHTENTSCYISGSAPSRQGLEQTLMSVVSEKVHNVEEIERPLAQT
LEGWVLQQAVTGLMLGGQLEQAEALCSQVLNVSPEHPAVMLSLRQVQCQRLLLASDGTVL
PDSVLEQLNNAVMVNPTNLGAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLGLHSCQVA
SLLRLALLALEPCMAGVPGDDWTNLILEATTEVLKLGSSPMALLFQALLNYVTKMAARET
RRFLERLVYVPSQYFPVTVVQVASWYLLRHLHAKHDQELLNVLLQHAKMNGDQRLLEFHS
LLASSSS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtaaagaagtgaaaacagcactgaaaagtgctagagaggcgattaaaaacaaa
gagttcaaagaggctctaaaacactgcaaggctgtattgaaaattgagaaaaacaactac
aatgcatgggtgttcattggcctggcagccagtgaactcgagcaacctgatcagtcacag
acggcttataaaaaggctgtggagctggagcccgagcagttgctggcatggcagggcttg
gcaaatctttatgagaagactgatcagtgggatttccaagttgaactgcctaacatctat
gagaagcttgttgagctgtatgcaagctctgacaaaagtaaatgttacgaggtgatcaaa
aagctgacggatatctatcagtcggacaaagaatatctaaagttgtcaaaggtttggctg
cagctcattcagctgaaggaggaagaggctgtggacaagaaagaattactgcagctatgg
caacagatgacccaactcctctcagaccaagaacagcaggacaatgaaactcaacagcat
ttaatcacagcatttgagaagtccatgactctcatggatccagtgccgggagaggaacac
aagaaagtctcagctgactatgtcaaatgtctttctgaacggccacaagaagaagccaaa
atgatagaggcatgtgagtccatgctgtctatctaccccaaccaaatgtatcctcttgaa
gtcctttgttcgcactacctcaaaaaaggtgttcagagtgaagatgcagccagctgtttc
tcccggctcctgaatctggccccaaccaatggattgggtcacttgggtcttggcaccaaa
gcactgcaagaagggaggtatatggatgccattagggacctttcacatgggttgaagaaa
attaactccggtacaggatggtgcagtctggctgaagctcagtttaaaatgcacagatac
tcagacagtgcagtgtcatgctcccaaggtctgacagtgtgtgtctccggggacgaggag
ctgagagtcaaactgtttcgactaaaactagaggctttagtcaagagtggaggagagaag
gctgcagaacaggctttagagacgtttgcacagatcccaaatgctggaaaggacacagtt
ctagtagcccttaaaggacaagcataccttaacaagggacaagctgatgaagcactgaag
gtgtcatcagagctggtggccactaaccctgatctctcccaggggtttgtactaagagga
ctggcacaaatggctcagggccaactgcagctggcagaggagagtttccttaaggcaact
agccagagcccagactgtggagagtattatttcttgctgggaaaactctactgggacatg
ggagaagagacccgcaaagaccggagcaaagcccatacacatttgttaaaggctgcaaag
ttagacccacagcttggttgtgtattccgctacctcgggcattattatcgggaggtggca
aatgatcatggccgggcacgaggctgctttaagaaggcctttgagttggacaacgaagat
gccgagtctggagctgcctcagtggatctcagtatggagcaggacgatatggacactgcc
ttagcaattctccagtcggtgattgagaaagccactccaggctcagccaaatgggcgtgg
atgagacgagggctttatcacctaaaggttggagagcatcaacaagctactgcagatctg
caggcagctctgagggcagaccctgaggactgggtgtgttgggagtgtttaggtgaggcc
tacttaaaccgccgcagcttcacagcagctctgaaggcctttggtaaggcccatcagctt
catccctcctccatctacagcgtctaccaggctgctgctatcaaacagaccctgggcaag
ttcaaggaagcggttgcagagtatgtgcagatcacaactgtgcaggactatgtccctgct
cttaaaggtcttggggagtgccagttgtccttggccaaaagtttaatggaagactgcaga
gacgggggagccattgacctcattcagcaagccatacagaacctcttcagagctgtggag
ctgcggccagacctgtcctgtttgtggaagctgctgggagacgcttgcaccgcagtcagc
gcggtgtctgcaaacagagcccaggttgtagtgcccgcccagctggctggtttagacccc
aacacccagagtcacacactcaaccaggcccagacactcaaagtcggagagcggtgttac
ggccgtgctttgaagatgatgtctgaggtccccggcctttggtatgacctaggactcaac
tactaccaccagtccaggctctcctgccctacagagggagaacaaaactccccatctctg
ctactagagaaggcccagcagtgtttgaaaaaggctatcatgatggacagtgggaactat
agctactggaatgctttgggagtgatttccatgagcaaaggtcttgaaaacttcccactg
gctcaacattgcttcatcaagtctgtacaagtagaacctaataatgttgttgcttggacc
aatcttggtaccctgtatttgaagaaggacaatatagagctatcgcacgaagccttcaaa
attgctcagtccctggagccactttatgtcaactgctggattggacaggcgctgatagca
gagagagtgggaagctatgacaccatggatcttttcaggcacaccactgaactcagcact
catatggagggagttaaaggttatgcctactgggtgtgttccaccctgctggataagagc
aacagagactctgaactgtaccgctacaacatagtccagatgaacgccacctctgcggct
caggtgtcactcagcaagtacacagagaggatccagtccgaccccgatgccttcattatg
cttggctatctgaatgagcacctgcagctgaagaggcaggccttacaggcttaccaaaga
gctgttgagctgcttcagtccatgtcctcgacagaagagctggcttttgctctgggcagc
tatggccgtgctttgtgcacctcgggtcagtgggaggaggcagtgcatgtttataaatcc
actccactgcaggagctcagtgatctggttggtctagctctggcctactgcagggcagga
cttatcccagagagcaccaacgcctatgaacgtgccttggctgtggctcccagtgagaag
gagaaagcttacatcttgacagctctggccatgcttcagcaccggcagggtaaccttgac
tcagccaagactcttctgtttaaatgctcaatgttgaaagagccaatcgcggagtctctg
ctgtgtttatgtgccctgggattggtccacagtgatgctatgttagccactgctgccctg
accgagctactgaagcaaggatctgccactgggaatgttgtagagcaacgatgtctcctg
acgtgcgccttgctggccctgcagggcaactacagtgcagtgcaaagggaggcttccaga
gctgtacatagcaatcctggaaacccatctctgtgggccctgctgtccagagtggtacca
caatactaccccagtaaagcagacggtggcgcaatggctggtcacgtcgcctgtctctcc
agtatgaccctaggaaagagggcgttgttgtacagtggagtgaaccaattggccagcggg
agacactctggagaggacagtcacagaaatgctctgaagactatgcagagagctgtactg
ctatgtcctgatgatccagcaacatgggcaggattgatggctgcctgtcacacagaaaac
acatcctgttatatttcaggttctgcaccttccagacaaggacttgagcaaacccttatg
tcagtggtttctgagaaagtgcataatgtggaggagatcgagcgccctctagcccagact
ctagagggctgggtactacaacaggcagtgactggtctcatgctggggggacagctggag
caggcagaagccctttgctcacaggtgctgaatgtgtctccagaacacccagcggtgatg
ctgtcactcagacaggtgcagtgtcagcgcctcctccttgccagtgacggtactgttctc
ccagactcagttctggaacagctaaacaacgctgtgatggtgaaccccactaaccttggg
gcatggcactggctggctgaggtgtatcgtacccagggtctgctggtccaggcagtcatg
gcttacagacagagtctgcagctagcctcacagcttggcctgcacagctgccaggtagcc
agcctgctccgactagccctgctggcactagaaccctgtatggcgggtgtcccaggagac
gactggaccaacctgatacttgaagccaccactgaggtcttaaagctgggttcctctcct
atggccctccttttccaggccctgctcaattatgtgacgaagatggctgccagggaaaca
aggcgttttttggagaggctggtatacgtcccctctcaatatttcccagtgacagtggtg
caggtggccagctggtatctcctcagacacttgcatgccaaacacgaccaggagctattg
aatgtacttttacaacatgccaaaatgaatggagatcaaagactgctggagtttcattca
ctgcttgcctcttcttcatcttga
DBGET
integrated database retrieval system
