| Entry |
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
amn Amycolatopsis mediterranei S699
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:amn00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RAM_03355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:amn03021]
RAM_03355
03400 DNA repair and recombination proteins [BR:amn03400]
RAM_03355
Enzymes [BR:amn01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RAM_03355
Transcription machinery [BR:amn03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RAM_03355
DNA repair and recombination proteins [BR:amn03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RAM_03355
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
721516..725427
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| AA seq |
1303 aa
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAALEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLATEFDVSAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLTETAEGAGN
AYSSPAEAIMAYDRKALSLHAPVKIRITDRQPAKADEARLAEKGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLTPVGKKAILDEYEGKASQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTTRGIMMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLLSSGISKVKVRSVLTCESV
VGICATCYGRSMATGLLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIVFDKLSKRQRLANTP
NGPLGDGDHVHVGQQLLEGTPDPHEVLRVMGPREAQIHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEATNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR |
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| NT seq |
3912 nt +upstreamnt +downstreamnt
gtgctggacgtcaactttttcgatgagctccgcattggtctcgccacggccgacgacatc
cgtcagtggtcgtacggcgaggtcaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgttccctcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcttacgtcatcaccggcgtgaac
acggagctgcgccacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgtgacgccgacatcgaggcgcgtgcgcagaagctcgaagccgac
ctggccgcgctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagctgcgcgaccgcgccggccgcgagctggaccgcctcgag
gaggtctggacgaccttcacgaagctcgacacccgccagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtctccgcggaggcagacaacctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctcgcgg
ccgcaggtgtgggacgtgctggaagaggtcatcaccggccacccggtgatgctgaaccgc
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgcccgctcgccatgccgcggctggac
atggtcaccggcctgttccacctgacccgcctcaccgagacggccgagggcgcgggcaac
gcgtactcgtcgccggccgaggcgatcatggcctacgaccgcaaggcgctgagcctgcac
gctccggtcaagatccgcatcaccgaccgtcagccggcgaaggccgacgaggcgcggctc
gcggagaagggctgggagccgggcaaggcgtggctggccgagacgaccctgggccgcgtg
ctcttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cggcaggccgcgatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
accctggaccgcctcaaggacgccggtttctactgggcgacccgctcgggcgtcaccgtc
gccatctcggacgtgctcaccccggtgggcaagaaggccatcctcgacgagtacgagggc
aaggcctcccaggtcgagaagcgctaccagcgtggtcagctgtcgcacgccgagcggaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctaccggacgacaacccgatcgccatgatcgtgaagtcgggtgccgccggtaacatg
acgcaggtccggtccctggccggtatgcgtggcctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgagggcctgtcggtggcggagtacttcatc
gccacgcacggtgcccggaagggcctggcggacacggcgctgcggaccgccgactcgggt
tacctgacccggcgtctggtggacgtctcgcaggacgtcatcgtccgcgagaccgactgc
ggcaccacccgcggcatcatgatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgcgaccagcacgtcgagacctccgtgtacgcgcggaacctcgcgacggacgcggtggac
gccaagggcaacgtcgtgctgaacgccggcgacgacatcggcgacccggccatcgacaag
ctgctctccagcggcatctcgaaggtcaaggtccgctcggtgctgacctgcgagtcggtc
gtcggtatctgcgcgacctgctacggccgctcgatggcgaccggtctgctcgtcgacgtc
ggcgaggcggtgggtatcgtcgccgcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtggccggtgacgacatcacgaccggtctgccgcgt
gtccaggagctgttcgaggcccgcgtcccgaagggcaaggcgcccatcgccgacgtcgac
ggccgcgtgcggatcgaggagagcgagcggttctggaagatcaccctcatcccggacgac
gggggcgaggagatcgtcttcgacaagctgtccaagcggcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccacgtgcacgtcggccagcagctgctcgagggcacg
ccggacccgcacgaggtgctgcgggtcatggggccgcgcgaggcgcagatccacctggtg
gacgaggtccagaaggtgtaccgggcgcagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggggccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgacgaaccgggccgcggtcgcc
gaaggcggcgagccggcttcgggccgtccggtgctgatggggatcacgaaggcgtcgctc
accacggactcgtggctgtcggcggcgtcgttccaggagaccacgcgagtcctgaccgac
gcggcgatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtacgggcatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcccgggtcgcggcgtacgcgatcccgtcctacgacgacggttactacaccccg
gacgtgttcggtacgggtaccggtgccgcggttccgctggacgactacgacttcggccgc
gacttccgctga |
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