Amycolatopsis mediterranei S699: RAM_13420
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Entry
RAM_13420 CDS
T01822
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amn
Amycolatopsis mediterranei S699
Brite
KEGG Orthology (KO) [BR:
amn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amn03016
]
RAM_13420
Enzymes [BR:
amn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RAM_13420
Transfer RNA biogenesis [BR:
amn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RAM_13420
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEK41174
UniProt:
A0A9R0U7Z0
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All DBs
Position
complement(2827622..2828845)
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AA seq
407 aa
AA seq
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MEIESTGGPVLLREPAEGTPPVITDAAELAEACAKLAAGTGAVAVDTERASGYRYFPKAY
LVQLRREGAGTVLIDPIALDGELAPLREVLNSLEWVLHAASQDLPCLAELGLHPAALFDT
ELAGRLAGYERVALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLRE
KLEAELGAQGKLEWARQEFEFVRTAPPPPPRAEPWRRTSGVHKIRSPRGLAAVRELWQAR
DELARKRDRAPSRILPDSAIVNAVTADPKTVEELQALPVFSGRVQRKYTASWLRHLQAAK
ALPASELPSPSQPTDGPPPVNRWADKDPDAAARLSAARAALTAIAEDRRLPVENLLLPDL
VRRTCWRPPAETDEDSVAEVLRASGARPWQVELTAAVLSKALQTTAS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgagtccacgggcggccctgtgctgctacgcgaacccgccgagggcacaccc
ccggtgatcaccgacgccgccgagctggccgaagcctgcgccaagctcgccgcgggcacc
ggtgcggtcgccgtcgacaccgaacgcgcgtccggctaccggtacttccccaaggcctac
ctcgtgcagctgcgccgcgaaggcgccggcacggtgctgatcgacccgatcgcgctggac
ggcgaactggccccgctgcgcgaagtcctgaattccctggagtgggtgctgcacgccgcc
tcccaggacctcccctgcctcgccgagctgggcctgcacccggcggcgctgttcgacacc
gagctggccggccggctggcgggctacgaacgcgtcgcgctgggaacgctcgtcgagctg
ctgctggggtacaccctcgagaagggccacagcgcggccgactggtcgaagcggccgctg
ccggtcgactggctgaactacgccgccctcgacgtcgagctgctcatccagctgcgggaa
aagctggaagcggagctgggcgcccaaggcaagctggagtgggcgcggcaggagttcgag
ttcgtgcggacggccccgccgccgcccccgcgggccgagccgtggcgccggacgtccggc
gtgcacaagatccgcagcccgcgcggtctcgcggcggtccgcgaactgtggcaggcgcgc
gacgagctggcccgcaaacgcgaccgcgcaccgagccggatcctgccggacagcgcgatc
gtcaacgctgtcacggccgaccccaagacggtcgaagagctgcaggcgctgccggtgttc
agcggccgcgtccagcgcaagtacacggcgagctggctgcgccacctgcaggcggccaag
gcgctccccgcttccgagctgccgtcaccgtcccaaccgacggacggcccgcccccggtg
aaccgctgggcggacaaggacccggacgcggcggcccgcttgtcggcggcccgcgcggcc
ttgacggccatcgcggaggaccgccggctcccggtggagaacctgctgctgccggacctg
gtccgccgcacgtgctggcgcccgccggccgaaacggacgaggactcggtggcggaagtc
ctgcgcgcgagcggcgcccggccgtggcaggtcgagctgacggcggcggtgctgagcaag
gcgttgcagaccaccgcttcctga
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