Amycolatopsis mediterranei S699: RAM_35975
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Entry
RAM_35975 CDS
T01822
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
amn
Amycolatopsis mediterranei S699
Pathway
amn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RAM_35975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amn03400
]
RAM_35975
Enzymes [BR:
amn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RAM_35975
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RAM_35975
DNA repair and recombination proteins [BR:
amn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RAM_35975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
DUF6487
zf-FPG_IleRS
Zn_ribbon_TFIIB
DUF1028
Motif
Other DBs
NCBI-ProteinID:
AEK45668
UniProt:
A0A9R0P3I1
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All DBs
Position
7749092..7749865
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AA seq
257 aa
AA seq
DB search
MELARQVLAGALGRKIRSVDDHDDWVCRPHAPGDIATALRGGRLTEAHRRGKTLWCETEG
GDGRPGPNLGLHLGMAGQLRFAGESGPPGRIRDRDEKPEWFRFGITFADGEQLRLFDTRR
LSRVRLDPDLDALGPDAGEISRRDFAERVGRGRAPLKARLLDQSVVAGIGNLLADETLWQ
AALSPARPVHEMSSDDLGHLHKALRKALRAAIRHGGVHTGEIIGHRRAGEHCPRCGAEMS
HGTVGGRSTWWCSKEQS
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
gtggaactcgcccggcaggtcctcgccggtgcgctcggccggaagatccgctcggtcgac
gaccacgacgactgggtctgccgcccccacgcacccggggacatcgccaccgcgttgcgg
ggcggccggctcaccgaagcgcaccggcggggcaagacactgtggtgcgaaacggaaggc
ggcgacgggcggcccggcccgaacctcggcctgcacctcgggatggccgggcagctgcgg
ttcgccggcgagagcggaccgcccggccggatccgcgaccgggacgagaaacccgagtgg
ttccgcttcggcatcactttcgccgatggcgaacagctgcgcctgttcgacacgcggcgg
ctcagccgggtgcggctcgacccggatctcgacgcgctcggcccggacgccggggagatc
tcgcgccgtgacttcgccgagcgcgtcggccgcggccgggcgccgctgaaggcgcggctg
ctggaccagtcggtggtggcggggatcgggaacctgctggccgacgaaaccctctggcag
gcggcactctccccggcgcggccggtgcacgaaatgagctccgacgacctcggtcacttg
cacaaggcgctgcggaaggcgttgcgcgcggcgatccgccacggcggcgtgcacaccggc
gagatcatcggccaccggcgggcgggcgagcactgcccgcgctgcggcgcggagatgagc
cacggcacggtcggcggccggtcgacctggtggtgttcgaaggagcagtcctag
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