Amycolatopsis methanolica: AMETH_0283
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Entry
AMETH_0283 CDS
T03230
Symbol
sigB
Name
(GenBank) RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
amq
Amycolatopsis methanolica
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amq03021
]
AMETH_0283 (sigB)
Transcription machinery [BR:
amq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMETH_0283 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_23
HTH_Crp_2
HTH_3
MarR
MarR_2
KORA
HTH_31
HTH_24
HTH_Tnp_4
HTH_IclR
Sigma70_ECF
DUF7343
DUF134
HTH_26
GerE
Trp_repressor
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
AIJ20375
UniProt:
A0A076MNC4
LinkDB
All DBs
Position
complement(290616..291422)
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AA seq
268 aa
AA seq
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MTGSRTEPTQPTSSNEYGHLAPLFDELASLPADAPRRAALRDELVTGHLPLAEHIAQRFS
GRGVAKEDLVQVATVGLINAVDRFDASRGSDFLSFAVPTVMGEVRRHFRDTGWLVRVPRR
LKELHLSISSASTELAQRLGRAPTPSEIASHLGVSQDEVYEGLEAGNAYHSMSLDEVLSG
DTENLALGDTLGEEDAGLEGVENHEALLPLIQELPERERKILGLRFVHNMTQTQIAERIG
VSQMHVSRLLARTLQRLRDGLTEQDGEL
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggttcccggaccgagccgacacaacccacatcgtcgaacgaatacggccacctg
gccccgctgttcgacgagctggcgagcctgccggccgatgccccccgccgcgccgccctg
cgcgacgagctcgtgacggggcacctgcccttggccgagcacatcgcgcagcggttctcc
gggcgcggggtggcgaaggaggacctggtccaggtcgccaccgtggggttgatcaacgcg
gtggaccggttcgacgccagccgcggctcggacttcctgtccttcgccgtgcccacggtg
atgggtgaggtgcgccgccacttccgggacaccggctggctggtgcgggtgccgcgccgg
ctcaaggagctgcacctgtcgatttccagcgcgagcaccgagctcgcgcagcggctgggc
cgcgcgccgacgccaagcgagatcgcgagccacctcggcgtgagccaggacgaggtctac
gagggcctggaagcgggtaacgcctaccactcgatgtcgctggacgaggtgctgtccggc
gacaccgagaacctcgcgctcggcgacacgctgggtgaggaggacgccggcctggagggc
gtcgagaaccacgaggcgctgctgccgctgatccaggagctgcccgagcgcgagcggaag
atcctcggcctgcggttcgtgcacaacatgacgcagacccagatcgcggagcggatcggc
gtttcgcagatgcacgtgtcgcggctgctcgcccgcaccctgcagcggctgcgcgacggg
ctcaccgagcaggacggggagctgtga
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