Amycolatopsis methanolica: AMETH_0642
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Entry
AMETH_0642 CDS
T03230
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMETH_0642 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amq03021
]
AMETH_0642 (rpoC)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_0642 (rpoC)
Enzymes [BR:
amq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMETH_0642 (rpoC)
Transcription machinery [BR:
amq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMETH_0642 (rpoC)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMETH_0642 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIJ20734
UniProt:
A0A076MJ17
LinkDB
All DBs
Position
651113..655024
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEISVERKNIEAKRDADIEARAQKLEAD
LAQLEAEGAKSDVRRKVKEGGEREMKQLRDRAQRELDRLEEIWTTFTKLEPRQLIADETL
YRELYDRYGEYFTGGMGAEAIQKLATEFDVNAEAEKLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVITGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAVGAGQ
AFSSPAEAIMAFDRKTLGLHAPIKIRVKDRQPNKAQIAELTEKGWEPGQPWLAETTLGRV
LFNDLLPADYPFINEPLPKKRQAAIVNDLAERYSMTQVAQVLDRLKDAGFYWATRSGVTV
SMFDVIVPPEKKEILDRYEAKAAQVEKRYQRGQLSHAERNNELVKVWTQATDEVAEIMED
AFPEDNPISMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKSNFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGVTRPIGEKQPDGTVL
RGAHVETSVYARTLAQDVTDEQGNVVLNAGDDLSDPAMEKLIAFGVTKVKVRSVLTCESA
VGVCAMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIVFDKLSKRQRLANTP
NGPLQDGDHVNVGQLLLEGTPDPHEVLRVMGPREAQMHLVEEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTDFLPGELPERTKFESTNRSVVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagctccggatcggcctggcgaccgccgatgacatc
cgtcagtggtccttcggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggtgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggtgttccttcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgacgctggagaacgagatcagcgtcgagcggaag
aacatcgaggcgaagcgcgacgccgacatcgaggcgcgcgcgcagaagctcgaggccgac
ctcgcccagctcgaggccgaaggcgccaagtccgacgtgcgccggaaggtcaaggagggc
ggcgagcgggagatgaagcagctccgcgaccgcgcgcagcgcgagctggaccggctcgag
gagatctggaccaccttcaccaagctcgagccgcgtcagctgatcgcggacgagaccctg
taccgcgagctgtacgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcaacgccgaggccgagaagctgcgcgacacg
atccgcaacggcaaggggcagaagaagctccgcgctctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtcctcgacgcggtccccgtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgccgggtcatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggccctggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggacatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcgggcccgc
ccgcaggtgtgggacgtgctggaagaggtcatcaccggtcacccggtgctcctcaaccgt
gcgccgaccctgcaccggctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgcccgctggccatgccgcgtctggac
atggtcaccggcctgttccacctgacccgtctcgacgagaacgcggtcggcgccggccag
gcgttcagctccccggccgaggccatcatggccttcgaccgcaagacgctgggcctgcac
gcgccgatcaagatccgcgtcaaggaccgtcagccgaacaaggcccagatcgccgagctc
accgagaagggctgggagcccggtcagccgtggctggccgagaccaccctgggccgggtg
ctgttcaacgacctgctgccggcggactacccgttcatcaacgagccgctgccgaagaag
cgccaggcggcgatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
gtcctggaccggctcaaggacgccggcttctactgggccacccgctcgggtgtcacggtg
tcgatgttcgacgtcatcgtgccgccggagaagaaggagatcctcgaccggtacgaggcc
aaggccgcgcaggtggagaagcgctaccagcgtggtcagctctcgcacgccgagcgcaac
aacgagctggtcaaggtgtggacccaggcgaccgacgaggtcgccgagatcatggaggac
gccttcccggaggacaacccgatctcgatgatcgtgaagtccggggcggcgggcaacatg
acccaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgcccgatcaagtcgaacttccgcgagggcctgtcggtggcggagtacttcatc
gccacccacggtgcgcggaagggtctggccgacaccgcgctgcggaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgggagaccgactgc
ggcaccagccgcggcgtgacccggccgatcggcgagaagcagccggacggcaccgtgctg
cgcggcgcgcacgtggagaccagcgtgtacgcccggacgctcgcccaggacgtcaccgac
gagcagggcaacgtcgtgctcaacgcgggcgacgacctgtccgacccggccatggagaag
ctgatcgcgttcggcgtcaccaaggtcaaggtccgctcggtgctgacctgcgagtcggcc
gtcggtgtctgcgcgatgtgctacggccgctcgatggcgaccggcaagctcgtcgacgtg
ggtgaggccgtcggtatcgtcgccgcacagtcgatcggtgagccgggtacgcagctgacg
atgcgtaccttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtcaccgagctgttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctcatcccggacgac
ggtggcgaggagatcgtcttcgacaagctgtcgaagcgtcagcgcctggccaacacgccg
aacgggccgctgcaggacggcgaccacgtgaacgtcggccagctgctgctcgagggcacg
ccggacccgcacgaggtgctgcgtgtcatgggcccgcgcgaggcgcagatgcacctcgtc
gaagaggtccagaaagtgtaccgggcccagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggttcgacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgagagcacgaaccggtcggtcgtggcc
gagggcggcgagccggcctcgggccgcccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcgtcgttccaggagaccacgcgtgtcctgaccgac
gcggcgatcaacggccgcagcgacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggcgggcaccggcatcaaccggtaccggaacatccaggtgcagccgacg
gaggaggcccgggtggcggcgtacgccatcccgtcctacgacgacggctactacaccccg
gacgtcttcggcaccggcaccggcgccgcggttccgctggacgactacgacttcggtcgg
gacttccgctga
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