KEGG   Amycolatopsis methanolica: AMETH_0642
Entry
AMETH_0642        CDS       T03230                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amq  Amycolatopsis methanolica
Pathway
amq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AMETH_0642 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amq03021]
    AMETH_0642 (rpoC)
   03400 DNA repair and recombination proteins [BR:amq03400]
    AMETH_0642 (rpoC)
Enzymes [BR:amq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AMETH_0642 (rpoC)
Transcription machinery [BR:amq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AMETH_0642 (rpoC)
DNA repair and recombination proteins [BR:amq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AMETH_0642 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AIJ20734
UniProt: A0A076MJ17
LinkDB
Position
651113..655024
AA seq 1303 aa
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEISVERKNIEAKRDADIEARAQKLEAD
LAQLEAEGAKSDVRRKVKEGGEREMKQLRDRAQRELDRLEEIWTTFTKLEPRQLIADETL
YRELYDRYGEYFTGGMGAEAIQKLATEFDVNAEAEKLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVITGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAVGAGQ
AFSSPAEAIMAFDRKTLGLHAPIKIRVKDRQPNKAQIAELTEKGWEPGQPWLAETTLGRV
LFNDLLPADYPFINEPLPKKRQAAIVNDLAERYSMTQVAQVLDRLKDAGFYWATRSGVTV
SMFDVIVPPEKKEILDRYEAKAAQVEKRYQRGQLSHAERNNELVKVWTQATDEVAEIMED
AFPEDNPISMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKSNFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGVTRPIGEKQPDGTVL
RGAHVETSVYARTLAQDVTDEQGNVVLNAGDDLSDPAMEKLIAFGVTKVKVRSVLTCESA
VGVCAMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIVFDKLSKRQRLANTP
NGPLQDGDHVNVGQLLLEGTPDPHEVLRVMGPREAQMHLVEEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTDFLPGELPERTKFESTNRSVVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq 3912 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacttcttcgatgagctccggatcggcctggcgaccgccgatgacatc
cgtcagtggtccttcggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggtgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggtgttccttcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgacgctggagaacgagatcagcgtcgagcggaag
aacatcgaggcgaagcgcgacgccgacatcgaggcgcgcgcgcagaagctcgaggccgac
ctcgcccagctcgaggccgaaggcgccaagtccgacgtgcgccggaaggtcaaggagggc
ggcgagcgggagatgaagcagctccgcgaccgcgcgcagcgcgagctggaccggctcgag
gagatctggaccaccttcaccaagctcgagccgcgtcagctgatcgcggacgagaccctg
taccgcgagctgtacgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcaacgccgaggccgagaagctgcgcgacacg
atccgcaacggcaaggggcagaagaagctccgcgctctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtcctcgacgcggtccccgtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgccgggtcatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggccctggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggacatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcgggcccgc
ccgcaggtgtgggacgtgctggaagaggtcatcaccggtcacccggtgctcctcaaccgt
gcgccgaccctgcaccggctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgcccgctggccatgccgcgtctggac
atggtcaccggcctgttccacctgacccgtctcgacgagaacgcggtcggcgccggccag
gcgttcagctccccggccgaggccatcatggccttcgaccgcaagacgctgggcctgcac
gcgccgatcaagatccgcgtcaaggaccgtcagccgaacaaggcccagatcgccgagctc
accgagaagggctgggagcccggtcagccgtggctggccgagaccaccctgggccgggtg
ctgttcaacgacctgctgccggcggactacccgttcatcaacgagccgctgccgaagaag
cgccaggcggcgatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
gtcctggaccggctcaaggacgccggcttctactgggccacccgctcgggtgtcacggtg
tcgatgttcgacgtcatcgtgccgccggagaagaaggagatcctcgaccggtacgaggcc
aaggccgcgcaggtggagaagcgctaccagcgtggtcagctctcgcacgccgagcgcaac
aacgagctggtcaaggtgtggacccaggcgaccgacgaggtcgccgagatcatggaggac
gccttcccggaggacaacccgatctcgatgatcgtgaagtccggggcggcgggcaacatg
acccaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgcccgatcaagtcgaacttccgcgagggcctgtcggtggcggagtacttcatc
gccacccacggtgcgcggaagggtctggccgacaccgcgctgcggaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgggagaccgactgc
ggcaccagccgcggcgtgacccggccgatcggcgagaagcagccggacggcaccgtgctg
cgcggcgcgcacgtggagaccagcgtgtacgcccggacgctcgcccaggacgtcaccgac
gagcagggcaacgtcgtgctcaacgcgggcgacgacctgtccgacccggccatggagaag
ctgatcgcgttcggcgtcaccaaggtcaaggtccgctcggtgctgacctgcgagtcggcc
gtcggtgtctgcgcgatgtgctacggccgctcgatggcgaccggcaagctcgtcgacgtg
ggtgaggccgtcggtatcgtcgccgcacagtcgatcggtgagccgggtacgcagctgacg
atgcgtaccttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtcaccgagctgttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctcatcccggacgac
ggtggcgaggagatcgtcttcgacaagctgtcgaagcgtcagcgcctggccaacacgccg
aacgggccgctgcaggacggcgaccacgtgaacgtcggccagctgctgctcgagggcacg
ccggacccgcacgaggtgctgcgtgtcatgggcccgcgcgaggcgcagatgcacctcgtc
gaagaggtccagaaagtgtaccgggcccagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggttcgacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgagagcacgaaccggtcggtcgtggcc
gagggcggcgagccggcctcgggccgcccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcgtcgttccaggagaccacgcgtgtcctgaccgac
gcggcgatcaacggccgcagcgacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggcgggcaccggcatcaaccggtaccggaacatccaggtgcagccgacg
gaggaggcccgggtggcggcgtacgccatcccgtcctacgacgacggctactacaccccg
gacgtcttcggcaccggcaccggcgccgcggttccgctggacgactacgacttcggtcgg
gacttccgctga

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