Amycolatopsis methanolica: AMETH_1638
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Entry
AMETH_1638 CDS
T03230
Symbol
whiG
Name
(GenBank) RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
amq
Amycolatopsis methanolica
Pathway
amq02020
Two-component system
amq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AMETH_1638 (whiG)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AMETH_1638 (whiG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amq03021
]
AMETH_1638 (whiG)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
amq02035
]
AMETH_1638 (whiG)
Transcription machinery [BR:
amq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMETH_1638 (whiG)
Bacterial motility proteins [BR:
amq02035
]
Flagellar system
Flagellar assembly proteins
Stator
AMETH_1638 (whiG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_23
UPF0122
KORA
Motif
Other DBs
NCBI-ProteinID:
AIJ21730
UniProt:
A0A076MSG0
LinkDB
All DBs
Position
1676990..1677727
Genome browser
AA seq
245 aa
AA seq
DB search
MWREFRERPEQRLRERLVLHYAPLVKYVAGRVGTGLPTHVDVSDLIQSGIFGLIDAIEKF
EPERGLRFETYAMQRIRGAILDDLRSQDWVPRVVRSRAREVERALERLGGRLRRTPTDTE
VAAELGITLDELRDLYSQLQLTSVVALEDLMAAGRESGSLVDTLPDDDAIDPVAVLVDRD
NRRQLAEAIAQLTERDRIVVSLYYFERLTLAEIGRVLGVTESRVSQLHTRAVLRLRARLT
EQAGV
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
gtgtggcgcgagttccgcgaacgtccggagcagcggctgcgcgagcgcctggtcctgcac
tacgcgccgctggtcaagtacgtcgccgggcgggtcggcaccgggctgcccacgcacgtc
gacgtcagcgacctgatccagtccggcatcttcggcctgatcgacgccatcgagaagttc
gaacccgagcgtggcctgcggttcgagacctacgcgatgcagcgcatccgcggcgcgatc
ctcgacgacctgcgctcgcaggactgggtgccccgagtggtgcgcagccgcgcccgtgag
gtggagcgcgccctcgaacgcctcggcggcaggttgcgccgcaccccgaccgacaccgag
gtcgccgccgagctgggcatcaccctcgacgagctgcgcgacctctacagccagctgcag
ctgaccagcgtggtcgcgctcgaggacctcatggcggcaggccgggagagcggctcgctg
gtcgacacgctccccgacgacgacgccatcgaccccgtcgccgtgctcgtcgaccgggac
aaccgccgccagctcgccgaggccatcgcgcagctcacggaacgcgaccggatcgtggtc
agcctctactacttcgaacggctgacgctcgctgagatcgggcgcgtccttggtgtcacc
gagtcgcgggtcagccagctgcacacacgcgccgtcctccggctgcgggctcggctcacg
gagcaggccggggtctag
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