Amycolatopsis methanolica: AMETH_1776
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Entry
AMETH_1776 CDS
T03230
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMETH_1776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amq03019
]
AMETH_1776
03009 Ribosome biogenesis [BR:
amq03009
]
AMETH_1776
Enzymes [BR:
amq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AMETH_1776
Messenger RNA biogenesis [BR:
amq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMETH_1776
Ribosome biogenesis [BR:
amq03009
]
Prokaryotic type
rRNA processing factors
AMETH_1776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
AIJ21868
UniProt:
A0A076MLZ3
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All DBs
Position
1824567..1827974
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AA seq
1135 aa
AA seq
DB search
MSNADTPAENTGGNTALPATGPLGELPPRVRVHALAKLLGSNSRVVLAKLTELGETARSA
QSSVPREVAVKVAEALAPADEQAVEESAAPEVVAPAEDAAPDAVPESTPEPVVETPAAET
PTAPTPELAAQATPEPEPEAAPSAAAPEPVAEPEPVRQPQRPPHMPVFAAPSPVFLPPEA
GAVEEEPAPKVERAAEVKPVDEDADEGEDGAGRRRRRRGRRGRGRGKGGDENATETTEAD
ETAPAEETAKREDEDTAEEGEPSEDTDETEGSSRRRRRRRRRKGSDGDSADSTTDDPPNT
VVHVREAKADEKSSSSSDGVRSVRGSTRLEAKRQRRRDGREAGRRRAPILSEAEFLARRE
SVERTMVVAERGEHTQIGVLEDGVLVEHFVTSQGSGSIVGNVYLGRVQNVLPSMEAAFVD
IGRGRNAVLYAGEVDWDAAGLEGKSRKIEQALSTGDNVLVQVTKDPVGHKGARLTTQISL
PGRFLVYMPSGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRTASEGISEEELERDV
RRLKAQWEVVKEKADAATSGKKSSAPVMLYEEPDLLVKVVRDLFTEDFVSLEVQGDTAWE
TIRAYVEHVAPDLTPRLKRYVGTGDVLAEHRIDEQLTKALDRKVWLPSGGYLVIDRTEAM
TVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNREL
VLKRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTTCEHCKGRGVIVSTEP
VKSGNGGNGGGHQHVGGGGGSRRSRGRAKVEEPQAEKTPEPSPVQRESTISAVEAMAKAA
KIASTKTEGGEKPETGATPADAAPAEAHTGAENAAGSGSGRSERRSRSRGKARAETAQPE
AQTQPNATVQPEAAPQPEPETAGAAPQAQTSPEGAAQAPAEAPPQFGTTAHESAAQPAVQ
ADAAAPSAQAGSEAQPAPSEQPGAGTEPAAQAQGEAAEQAGPEGAVEPPVQVRTEAQPSP
EAAAQPPTGEPAAAEQAKPSRARTRRVARRPAAPPEPVQAATEAPQVTTVPAGPVAGGPA
STSETSGPEAGGQEDSGETSPEVSVPTPATRTVRRRPRRAASRPAGPPVHASDQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgagaacaccggcgggaacaccgccctacccgcaacc
ggcccgctgggcgagttgccgcctcgcgtccgggtgcacgccttggcgaagctgctcggc
tccaacagccgggtcgtactggcgaagctcaccgaactgggtgagacggcgcgcagcgcg
cagtcgagcgtgccgcgggaggtcgcggtgaaggtcgccgaggcgctcgccccggccgac
gagcaggccgtcgaggagtcggctgcccccgaggtggtcgccccggccgaggacgcggcg
cccgacgccgttccggagagcacgcccgagccggtcgtcgaaacaccggccgccgagaca
ccgaccgccccgacccccgagctcgccgcccaggcgacgccggagcccgagcccgaggcc
gcgccgtcggccgcggcacccgagccggtcgccgagcccgagccggtgcggcagccgcag
cgcccgccgcacatgccggtcttcgcggccccgtcgccggtgttcctgccgccggaggcc
ggtgccgtcgaggaggagcccgcccccaaggtggagcgggccgccgaggtcaagccggtg
gacgaggacgccgacgagggtgaggacggtgcgggccgccgtcgccgccgccggggccgt
cgcggccgtggccggggcaagggcggcgacgagaacgccaccgagaccaccgaggccgac
gagaccgcgcccgccgaggagaccgccaagcgcgaggacgaggacaccgccgaagagggc
gagccgtccgaggacaccgacgagaccgaggggtcgagccgtcgtcgccgtcgccgtcgc
cgccgcaagggctccgacggggacagcgccgactccaccaccgacgacccgccgaacacc
gtcgtccacgtccgcgaagcgaaggccgacgagaagagcagcagcagctcggacggcgtg
cgcagcgtccgcggctccacgcgcctggaggccaagcgccagcgccgccgggacggccgc
gaggcgggccgccgccgtgcgccgatcctgtcggaggccgagttcctggcccgtcgcgag
tcggtcgaacgcacgatggtggtcgccgagcgcggcgagcacacccagatcggcgtgctc
gaggacggtgtcctggtcgagcacttcgtgacgtcgcagggcagcggctcgatcgtcggc
aacgtctacctgggccgcgtgcagaacgtgctgccctcgatggaggccgcgttcgtcgac
atcggccgcggtcgcaacgccgtgctctacgcgggcgaggtcgactgggacgccgccggc
ctggagggcaagtcccgcaagatcgagcaggccctgtccaccggtgacaacgttctggtg
caggtcaccaaggacccggtcgggcacaagggcgcccggctgactacccagatctcgctt
ccgggccggttcctggtctacatgccgtcgggcggcgccaccggcatctcgcgcaagctg
ccggagaacgagcggcggcggctgaaggacatcctcaagcggatcgtcccagaggacgca
ggcgtgatcatccgcaccgcgtcggagggcatcagcgaggaggagctggagcgcgacgtc
cggcggctgaaggcgcagtgggaggtcgtcaaggagaaggccgacgcggccacctccggc
aagaagtcgtccgccccggtgatgctctacgaggagccggacctgctggtcaaggtggtc
cgcgacctgttcaccgaggacttcgtctcgctcgaggtccagggcgacacggcgtgggag
accatccgcgcctacgtcgagcacgtcgcgccggacctcacccccaggctcaagcgctac
gtcggcaccggtgacgtgctggccgagcaccgcatcgacgagcagctcaccaaggcgctg
gaccgcaaggtgtggctgccctcgggtggttacctggtcatcgaccgcaccgaggcgatg
actgtgatcgacgtcaacaccggcaagttcaccggttcgggcggcaacctcgaggagacg
gtcacccgcaacaacctggagtcggccgaggagatcgtgcgccagctgcggctgcgcgac
atcggcggcatcatcgtgatcgacttcatcgacatggtgctggagtccaaccgcgagctg
gtgctcaagcggctgaccgagtgcctcggccgggaccgcacgcgtcaccaggtcgccgag
gtcacctcgctgggcctggtgcagatgacccgcaagaagatcggcaccggcctgctcgaa
gcgttctccacgacctgcgagcactgcaagggccggggcgtcatcgtctcgaccgagccg
gtgaagtcgggcaacggcggcaacggcggcggtcaccagcacgtcggtggcggcggcggt
tcgcgccggtcgcgtggccgggccaaggtcgaggagccgcaggcggagaagacgcccgag
ccctccccggtgcagcgggagagcacgatctcggccgtcgaggccatggccaaggccgcg
aagatcgcctcgacgaagaccgagggcggcgagaagccggagacgggcgcgaccccggcc
gacgcggcacccgccgaggcccacaccggcgcggagaacgccgccgggtcgggcagcggt
cgctccgagcggcggtcccgctcccgtgggaaggcccgcgccgagacggcccagcccgaa
gcccagacccagccgaacgcgacggtccagcccgaggcggcaccccagcccgagccggag
accgcgggcgccgctccgcaggcccagaccagcccggagggcgcggcgcaggctcccgct
gaggcgccgccgcagttcgggacgacggctcacgagtcagctgctcagcccgcggttcag
gctgacgcagcggctccgtccgcgcaggccggttccgaggcgcagcccgcgccgtcggag
cagcctggagcagggaccgagcccgcggcgcaggcccagggcgaagcggcggagcaggcc
ggcccggaaggcgcggtcgagcccccggtccaggtccgcaccgaggcgcagccttcgccg
gaggcagcggcacagccgccgaccggtgagccggccgccgcggagcaggcgaagccctcc
cgcgcccggacccggcgggtcgcccgcaggcccgcggcgcccccggagccggtccaggcc
gccaccgaggcgcctcaggtcaccaccgtcccggccggccccgtggccggcggaccggcg
tccacctcggaaacctccggccccgaagccggcgggcaggaggattccggcgagacgtcg
cccgaggtcagcgtgcccaccccggccacgaggacggtccgcaggcgcccgcgccgcgcg
gcctcccgcccggccggccccccggtgcacgcgtcggaccagagctga
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