Amycolatopsis methanolica: AMETH_2462
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Entry
AMETH_2462 CDS
T03230
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
amq
Amycolatopsis methanolica
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amq03016
]
AMETH_2462 (ligT)
Enzymes [BR:
amq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AMETH_2462 (ligT)
Transfer RNA biogenesis [BR:
amq03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AMETH_2462 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AIJ22554
UniProt:
A0A076MPE8
LinkDB
All DBs
Position
2552276..2552779
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AA seq
167 aa
AA seq
DB search
MVLFSAVLPPAAVVETLTAEVAGLPRLDGVRWSSPENWHVTLAFYGEDDAAGRADWLRPR
LAGMPAPRIWLEGAGTFTGVLYLGVYGEGITELGVAAGAGEEGRAYLPHLTLARTRERVP
AELERRLSGYRSEMWTAAEAVLMRSQRSADGVRYVVVERFPLSQQAR
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
gtggtgctgttctcggcggtcctgccgcccgccgcggtggtcgagaccctgaccgccgag
gtcgccgggctgccgcggctggacggcgtgcggtggagttcgccggagaactggcacgtc
acgctggctttctacggcgaggacgacgccgccgggcgcgcggactggctgcggccgcgg
ctggcgggaatgccggcgccgcggatctggttggaaggtgcgggcacgttcaccggggtc
ctctacctcggcgtgtacggcgaggggatcaccgagctcggggtcgccgccggggccggc
gaggagggccgtgcgtacctgccgcacctgaccctggcgcgcacgcgcgagcgggtgccg
gcggagctggagcggcggttgtccggctaccgcagcgagatgtggacggccgcggaggcg
gtgctgatgcggtcgcagcggagcgccgacggcgtgcgatacgtcgtggtcgagcggttc
ccgctgtcccagcaggccaggtag
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