Amycolatopsis methanolica: AMETH_4908
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Entry
AMETH_4908 CDS
T03230
Symbol
topA
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amq
Amycolatopsis methanolica
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amq03032
]
AMETH_4908 (topA)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_4908 (topA)
Enzymes [BR:
amq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AMETH_4908 (topA)
DNA replication proteins [BR:
amq03032
]
Prokaryotic type
DNA Topoisomerases
AMETH_4908 (topA)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMETH_4908 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF3040
Motif
Other DBs
NCBI-ProteinID:
AIJ25000
UniProt:
A0A076N2G7
LinkDB
All DBs
Position
5059818..5060822
Genome browser
AA seq
334 aa
AA seq
DB search
MRLRKSKLSEPGIRRQRSGRGFRYFTPEGEPLRDEGTLQRIKSLAVPPAWRDVWICPHPN
GHIQAVGTDDAGRRQYRYHDRWRRARDEEKHERVVELAKRLPKWRQRIAEDLTRPGLGCE
RVLAAALRMIDRGVFRVGSEEYAENHGTYGAATLLREHVTVKRDELRFSYPAKGGIERNI
TLTDPDLAATVKALRRSRTGSDRLFVYRTPNGWHEVHADEINEHFKEMVGDEFTVKDLRT
WNATVLAATAFAAADEVKSQRGLKRTQAAVMRQVSEELGNTPAVCRKSYVDPRIVEAHAI
GKTIASAVRRIGGVRGDEDREVLERAVIRLLRGV
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcgactgcgcaagagcaagctctccgaacccgggatccggcggcagcgcagcggccgt
ggcttccggtatttcacccccgagggggagccgctgcgcgacgagggaaccctgcagcgg
atcaagagcctcgccgtgccgcccgcgtggcgcgacgtgtggatctgccctcacccgaac
ggccacatccaggcggtgggcaccgacgacgcgggccgccgccagtaccgctaccacgac
cgctggcgccgggcgcgggacgaggagaagcacgagcgcgtcgtcgaactggcgaaacgg
ctgccgaagtggcggcagcggatcgccgaggacctgacccggccgggccttggctgcgag
cgcgtgctggccgccgcgctgcggatgatcgaccgcggcgtgttccgggtcggcagcgag
gagtacgccgagaaccacggcacctacggggcggcgacgctgctgcgtgagcatgtcacc
gtgaagcgggacgaactgaggttcagctaccccgccaagggcgggatcgaacggaacatc
acgctgaccgaccccgacctggccgcgacggtcaaggcgctgcgcaggtcgcgcaccggc
agcgaccggctgttcgtctaccgcacacccaacgggtggcacgaggtccacgccgacgag
atcaacgagcacttcaaggaaatggtcggtgacgagttcaccgtcaaggacctgcggacg
tggaacgcgaccgtcctcgcggccaccgcgttcgccgccgccgacgaggtgaagtcccag
cgcggactgaaacgcacgcaggccgcggtgatgcgccaggtttccgaggaactgggcaac
acccccgcggtgtgccggaagtcctatgtagacccgaggatcgtcgaggcgcacgcgatc
ggcaagaccatcgcctccgccgtgcgccggatcggcggcgtccgcggtgacgaggaccgc
gaggtgctggagcgggccgtcatccgtctcctgcgcggagtttga
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