KEGG   Amycolatopsis methanolica: AMETH_5142
Entry
AMETH_5142        CDS       T03230                                 
Symbol
pdhD
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
amq  Amycolatopsis methanolica
Pathway
amq00010  Glycolysis / Gluconeogenesis
amq00020  Citrate cycle (TCA cycle)
amq00260  Glycine, serine and threonine metabolism
amq00280  Valine, leucine and isoleucine degradation
amq00310  Lysine degradation
amq00380  Tryptophan metabolism
amq00620  Pyruvate metabolism
amq00630  Glyoxylate and dicarboxylate metabolism
amq00640  Propanoate metabolism
amq00670  One carbon pool by folate
amq00785  Lipoic acid metabolism
amq01100  Metabolic pathways
amq01110  Biosynthesis of secondary metabolites
amq01120  Microbial metabolism in diverse environments
amq01200  Carbon metabolism
amq01210  2-Oxocarboxylic acid metabolism
amq01240  Biosynthesis of cofactors
Module
amq_M00009  Citrate cycle (TCA cycle, Krebs cycle)
amq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
amq_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
amq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
amq_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:amq00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    AMETH_5142 (pdhD)
   00020 Citrate cycle (TCA cycle)
    AMETH_5142 (pdhD)
   00620 Pyruvate metabolism
    AMETH_5142 (pdhD)
   00630 Glyoxylate and dicarboxylate metabolism
    AMETH_5142 (pdhD)
   00640 Propanoate metabolism
    AMETH_5142 (pdhD)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    AMETH_5142 (pdhD)
   00280 Valine, leucine and isoleucine degradation
    AMETH_5142 (pdhD)
   00310 Lysine degradation
    AMETH_5142 (pdhD)
   00380 Tryptophan metabolism
    AMETH_5142 (pdhD)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    AMETH_5142 (pdhD)
   00670 One carbon pool by folate
    AMETH_5142 (pdhD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:amq04147]
    AMETH_5142 (pdhD)
Enzymes [BR:amq01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     AMETH_5142 (pdhD)
Exosome [BR:amq04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   AMETH_5142 (pdhD)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 DAO GIDA FAD_oxidored HI0933_like AlaDh_PNT_C FAD_binding_2 3HCDH_N NAD_binding_8 2-Hacid_dh_C Amino_oxidase Thi4 Trp_halogenase
Other DBs
NCBI-ProteinID: AIJ25234
UniProt: A0A076MWL2
LinkDB
Position
5304369..5305742
AA seq 457 aa
MSDAGADLVILGGGSGGYAAAFRAAELGQSVILIEKDKLGGTCLHRGCIPTKALLHAAEV
ADTAREGEQFGVKTTLEGVDIAGVHKYKDGVISRLYKGLQGLAKAHKVTVVEGTGTFVGG
TTVEVDGTRYTGKNLVLATGSYSKTLPGLELGGRIIASDEALTLDWIPEKVVVLGGGVIG
VEFASVWASFGVDVTIVEALPRLVPAEDEFASKQLERAFRRRKINFKTGVKFTGAKQDEN
GVTVSLESGETLEADLLLVAVGRGPNTAGHGYEEAGVRMERGFVITDERLRTNLPNVYAV
GDIVPGLQLAHRGFAQGIFVAEEIAGLEPKAIDEAGIPRVTYSHPEVASVGLSEAAAKER
YGSDVQTFTYDLAGNGKSQILKTSGAIKVIKAPDGPVVGLHLVGDRVGELIGEAQLIYNW
EAFPEDVAPLIHAHPTQTEALGEAHLALAGKPLHVHS
NT seq 1374 nt   +upstreamnt  +downstreamnt
gtgagcgacgctggcgccgacctggtgatcctcggtggcggatccggcggctacgccgcg
gccttccgcgccgcggagctgggccagtccgtcatcctgatcgagaaggacaagctgggc
gggacgtgcctgcatcgcggctgcatcccgaccaaggctctgctccacgcggccgaagtc
gccgacaccgcccgcgagggtgagcagttcggcgtgaagaccaccctggagggcgtcgac
atcgccggcgtccacaagtacaaggatggcgtcatcagccgcctctacaaggggctgcag
ggcctggccaaggcccacaaggtgaccgtcgtcgagggcaccggcacgttcgtcggcggc
accacggtcgaggtggacggcacccggtacacgggcaagaacctggtcctggccaccggc
tcgtactcgaagaccctgccgggcctggagctgggcggccggatcatcgccagcgacgag
gcgctgaccctggactggatcccggagaaggtcgtcgtgctcggcggcggcgtcatcggc
gtcgagttcgccagcgtgtgggcctccttcggcgtggacgtgacgatcgtcgaggcgctg
ccgcggctggtcccggccgaggacgagttcgccagcaagcagctcgagcgggcgttccgc
cgtcgcaagatcaacttcaagaccggcgtgaagttcaccggcgccaagcaggacgagaac
ggcgtgaccgtgtccctggagtccggtgagacgctggaggccgacctgctgctggtcgcc
gtcggccgcggtcccaacaccgcgggccacggctacgaggaggccggcgtccggatggag
cgcgggttcgtcatcaccgacgagcgcctgcgcaccaacctgccgaacgtctacgccgtc
ggcgacatcgtccccggcctgcagctcgcgcaccgcggcttcgcccagggcatcttcgtc
gccgaggagatcgccggcctggagccgaaggcgatcgacgaagccggcatcccgcgcgtc
acctacagccaccccgaggtcgcctccgtcggcctgagcgaggcggctgcgaaggagcgc
tacggctcggacgtgcagaccttcacgtacgacctggcaggcaacgggaagagccagatc
ctcaagacttccggcgcgatcaaggtgatcaaggcgccggacgggccggtcgtcggcctg
cacctggtcggggaccgggtcggcgaactgatcggcgaagcccagctgatctacaactgg
gaggccttcccggaggacgtcgctccgctgatccacgcccacccgacccagaccgaggcc
ctcggcgaagcacaccttgccctggccggcaagccactgcacgtgcacagctga

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