Amycolatopsis methanolica: AMETH_5161
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Entry
AMETH_5161 CDS
T03230
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03030
DNA replication
amq03430
Mismatch repair
amq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMETH_5161 (dnaE)
03430 Mismatch repair
AMETH_5161 (dnaE)
03440 Homologous recombination
AMETH_5161 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amq03032
]
AMETH_5161 (dnaE)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_5161 (dnaE)
Enzymes [BR:
amq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMETH_5161 (dnaE)
DNA replication proteins [BR:
amq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMETH_5161 (dnaE)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMETH_5161 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AIJ25253
UniProt:
A0A076MWZ5
LinkDB
All DBs
Position
complement(5324189..5327764)
Genome browser
AA seq
1191 aa
AA seq
DB search
MSNDSFVHLHVHTEYSMLDGAAKIAPLFAEASRLGMPAVGMTDHGNMYGADEFYQQSRKA
GLKPIIGIEAYIAPESRFTKKPIFWGQASQRGSDEFGEGGDVSGGGAYTHMTMLAENATG
LRNLFKLSSLASIQGYYRKPRMDRELIAENAAGIIATTGCPSGEVQTRLRLGQKQEAIQA
ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPLATNDSHYVTKDQADSH
SALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMREYWDTEVPGAADSTLLIAERVQSYED
VYTHKDRMPVFEVPEGHDEASWLRAEVDRGLAWRFPEGAPEGYRERLDMELEVIIGKGFP
AYFLVVADLINYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFERFLNPERVS
MPDIDIDFDDRRRGEMIRYATEKYGADKVAQVITFGTIKTKAAIKDSARVHFGQPGYAIA
DKISKALPPPIMAKDIPLSGIVDPQHERYGEAAEVRTLIETDDEVKTIFETARGLEGLIR
NAGVHACAVIMSSEPLMDAIPLWQRDDGSIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD
AIDNIKANRGIDIDLDTLGVDDPETYKLLSRGDTLGVFQLDGGPMRDLLRRMQPTVFDDI
VAVGALYRPGPMGMNAHNDYADRKNNRQQVKPIHPELEEPLKEILADTYGLIVYQEQIMH
IAQKVAGYSMGRADVLRRAMGKKKKEVLDKEFEGFHAGMKENGFSDEAIQALWDTILPFA
GYAFNKSHAAAYGLVSYWTAYLKANYTAEYMAALLTSVGDNKDKSAVYLSECRRLGIKVL
PPDVNESGQRFAAVGDDIRFGMGAVRNVGANVVESIIKTRQEKGKYSSFTDFLDKSELVA
CNKRVIESLIKAGAFDSLGNTRLSMIQVHEDAVDAVVPLKRQEAMGQFDLFGAFGGDGDA
AEPAPSSSPLAHLKFGDEEWPRKQLLAYEREMLGLYVSAHPLDGAERILRKHAPRPIAAI
LDNPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFPKSYALFQADLIE
DNAVLVKGRVNWREDKMSVFGGGLVPLDLSEIGNGDDEPPLVLRCTAERLDKSVVGELKS
TLLAHRGDTPVRLKLVGKQRETTFALYDYPVKVSSMLMGELKGIPGITAGT
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaacgattccttcgtccacctgcacgtgcacaccgagtactcgatgctcgacggt
gcggcgaagatcgccccgctgttcgccgaggcgagtcgtctcggcatgcccgcggtcggg
atgaccgaccacggcaacatgtacggggcggacgagttctaccagcagtcgcgcaaggcc
gggctgaagccgatcatcggcatcgaggcctacatcgcgccggagtcgcggttcaccaag
aagccgatcttctgggggcaggcctcgcagcggggctcggacgagttcggtgagggcggc
gacgtctccggtggtggtgcgtacacgcacatgacgatgctggcggagaacgcgacgggg
ttgcgcaacctgttcaagctgtcgtcgctggcctcgatccagggctattaccgcaagccg
cggatggaccgggagctgatcgcggagaacgccgccggcatcatcgccaccaccggctgc
ccctccggtgaggtgcagacccggttgcggctgggccagaagcaggaggccatccaggcc
gcctccgattacaaggacatcttcggggcggacaacttcttcctggagctgatggaccac
ggcctgcccatcgagcggtcggtgcgcgaggggctgctggagatcggcaagctgctcgac
ctcaaaccgctggccaccaacgactcgcactacgtcaccaaggaccaggccgactcgcac
tcggcgctgctgtgcgtgcagtcgggcaagaccctcaacgacccgaaccggttcaagttc
gacggcgacggctactacctgaaatcggccgcggagatgcgcgagtactgggacaccgag
gtccccggcgccgccgactccaccctgctcatcgccgaacgcgtccagtcctacgaagac
gtctacacccacaaagaccggatgcccgtcttcgaggtgcccgagggacacgacgaagcc
tcctggctgcgcgccgaggtcgaccgcggcctggcgtggcggttcccggagggcgcgccc
gagggctaccgcgagcggctcgacatggagctcgaggtcatcatcgggaagggcttcccg
gcctacttcctcgtcgtcgccgacctcatcaactacgcccgcaaggtcggcatccgcgtc
ggtcccggccgtggttcggccgcggggtcgctggtcgcctacgtcctgggcatcacgaac
ctggacccgattccgcagaagctgctgttcgagcggttcctcaaccccgagcgcgtgtcg
atgcccgatatcgacatcgacttcgacgaccgccgccgtggcgagatgatccgctacgcc
accgagaagtacggcgcggacaaggtggcccaggtcatcaccttcggcaccatcaagacc
aaggcggcgatcaaggactcggcgcgcgtgcacttcggccagccgggttatgcgatcgcg
gacaagatctccaaggcgctgccgccgccgatcatggcgaaggacatcccgctgtccggc
atcgtggacccgcagcacgagcgctacggcgaggccgccgaggtccgcacgctgatcgag
accgacgacgaggtcaagacgatcttcgagaccgcgcggggcctggaaggcctgatccgc
aacgccggcgtgcacgcctgcgcggtcatcatgtccagcgaaccgttgatggacgccatc
ccgctctggcagcgggacgacgggtcgatcatcaccggatgggactacccctcctgtgag
gccatcggcctgttgaagatggacttcctgggcctgcgcaacctcaccgtcatcggtgac
gccatcgacaacatcaaggccaaccgcggcatcgacatcgacctggacacactgggcgtc
gacgacccggagacctacaagctgctgtcccgcggtgacacgcttggtgtgttccagctg
gacggcggcccgatgcgggacctgctgcgccgcatgcagccgacggtgttcgacgacatc
gtcgcggtcggcgcgctgtaccggcccggcccgatgggcatgaacgcccacaacgactac
gccgaccggaagaacaaccggcagcaggtcaagccgatccaccccgagctggaagagccc
ctgaaggagatcctggccgacacgtacggcctgatcgtctatcaggagcagatcatgcac
atcgcgcagaaggtcgccggctactcgatgggccgagcggatgtgctgcgccgcgcgatg
ggcaagaagaagaaggaggtcctcgacaaggagttcgagggcttccacgccgggatgaag
gagaacggcttctccgacgaggccatccaggcgctgtgggacacgatcctcccgttcgcc
gggtacgcgttcaacaagagccacgcggccgcctacggcctggtgtcgtactggacggcg
tacctgaaggcgaactacaccgcggagtacatggccgcgctgctcacctcggtgggcgac
aacaaggacaagtccgccgtctacctctccgagtgccgtcgcctcggcatcaaggtgctg
cccccggacgtcaacgaatccggccagcgcttcgccgcggtcggcgacgacatccgcttc
ggcatgggcgccgtccgcaacgtcggcgccaacgtcgtggagtcgatcatcaagacccgc
caggagaagggcaagtactcctccttcaccgacttcctcgacaagtccgaactggtggcg
tgcaacaagcgggtcatcgaatcgctgatcaaagccggcgcgttcgacagtctcggcaac
acgcgcctgtcgatgatccaggtgcacgaggacgcggtcgacgcggtggtgccgctcaag
cgccaggaggcgatggggcagttcgacctgttcggggcgttcggcggggacggcgacgcg
gccgagcccgcgccttcgtcgtcgccgctggcgcacctgaagttcggcgacgaggagtgg
ccgcgcaagcagctgctggcctacgagcgggagatgctgggcctgtacgtgtcggcgcac
ccgctggacggcgccgaacggatcctgcgcaaacacgccccacgccccatcgccgccatc
ctggacaacccacccaaggaaggcgagctggtcatctccggcctgatcacctcgctcgag
cgacgggtcaacaaaaagggcgaaccctgggcgatctgcacggtcgaggacatggacgcc
tcactggaagtcctgttcttccccaagtcctacgccctgttccaggccgacctcatcgag
gacaatgccgtcctggtcaagggccgcgtcaactggcgcgaagacaagatgtccgtcttc
ggtggcggcctggtgccgttggacctgtcggaaatcggcaacggcgacgacgagcccccg
ctcgtgctgcgctgcaccgcggaacgtctggacaagagcgtggtcggcgagttgaagtcc
acgctgctcgcccaccgcggcgacacccccgtccgcttgaagctggtgggcaaacaacgc
gagacgacgttcgccttgtacgactacccggtcaaggtgagctccatgctgatgggtgaa
ctgaaaggcatccccggcatcaccgccggcacctaa
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