Amycolatopsis methanolica: AMETH_5558
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Entry
AMETH_5558 CDS
T03230
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMETH_5558 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amq03000
]
AMETH_5558 (alkA)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_5558 (alkA)
Enzymes [BR:
amq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AMETH_5558 (alkA)
Transcription factors [BR:
amq03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AMETH_5558 (alkA)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AMETH_5558 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_5
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
AIJ25650
UniProt:
A0A076N4C8
LinkDB
All DBs
Position
complement(5726076..5727008)
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AA seq
310 aa
AA seq
DB search
MTGTVEIAVPGPFHLAAAAGFLEGFAPASRPHAAEEPGTLRFAFPLPGGWVHTGVRVRQR
APGSVEVSVVAGEADVAEAARHVARILSLDVDGSGFAAVGERDPVVVALQARYPGLRPVL
FTSPYEAACWAIIGQRIRFAQAALFKQRVAELHGRQLDVDGRRLWSFPAPAELLEMPAPP
WLPEIKVDRLRVVAEAALTGVLDPAALRVADPEDALETLRALPGIGAFSAQLILIRGAGH
PDVFPANERYLLEEMRHAYNRPAATPAELASIADAWAPYRSWAALLFRVARDRRPGPAAA
ATKEAPTQAA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggcaccgtcgagatcgccgtgccgggtccgttccacctcgcggcggcggccggg
ttcctggaggggttcgcacccgcgtcgcgaccgcatgcggcggaggagccgggcaccctc
cggttcgccttcccgttgccgggcgggtgggtgcacaccggcgtgcgggtacggcaacga
gcgcccggatcggtcgaagtgtcagtggtggcaggggaagccgacgtcgccgaggccgcg
cggcacgtggcgcggatcctgtcgctcgacgtggacggctccggtttcgccgcggtcggc
gagcgtgatccggtggtggttgcgttgcaggcgcggtatcccgggttgcggccggtgttg
ttcacgtcgccgtacgaggccgcctgctgggcgatcatcgggcagcggatccgcttcgcg
caggcggctctgttcaagcagcgggtcgccgaactgcacggcaggcagctggatgtcgac
gggcgtcggttgtggtcgttcccggcgccggcggagttgctggagatgcccgcgccgccg
tggctgccggagatcaaagtggaccgtctgcgtgtggtcgccgaggccgcgctgaccggc
gtcctcgacccggccgccctgcgcgtcgcggaccccgaggacgccctggagacgctgcgc
gcgctgcccggcatcggagcgttctcggcgcagctgatcctgatccgcggcgccggtcac
ccggacgtgttccccgcgaatgagaggtacctgctggaggaaatgcgccacgcctacaac
cgccccgccgcgacgcccgcggaactcgcctcgatcgccgacgcgtgggccccgtaccgc
agctgggccgccctgctgttccgcgtagcccgcgaccgccgcccgggccccgcagcggcg
gcgacgaaggaggcgccgacgcaagccgcctga
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