Amycolatopsis methanolica: AMETH_5841
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Entry
AMETH_5841 CDS
T03230
Symbol
alkA
Name
(GenBank) DNA repair protein and transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMETH_5841 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amq03000
]
AMETH_5841 (alkA)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_5841 (alkA)
Enzymes [BR:
amq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AMETH_5841 (alkA)
Transcription factors [BR:
amq03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AMETH_5841 (alkA)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AMETH_5841 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
UBA_6
Motif
Other DBs
NCBI-ProteinID:
AIJ25933
UniProt:
A0A076MZ62
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All DBs
Position
6022106..6023608
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AA seq
500 aa
AA seq
DB search
MTAIAAPAEQALWRDNERCYRAVASRDSRFDGQFVTAVRTTGIYCRPSCPALTPRQENVR
FYPTVAAAQAAGFRACRRCLPDAVPGSPEWNVRADLAARAMRLIADGVVERDGVPGLARR
LGYSERQLGRVLTAELGAGPLALARAHRAHSARLLIELSELPLSDVAFAAGFASVRQFND
TIREVFARTPSQLRTAAAAARRQAGAAEPEAGTAGTRLSLRLPFRPPFDAAGLLGFFAAR
AVPAVESVDGHSYARTLRLPHGAATVTLTPQDGHVRCDLRLADVRDLGAAVTRARRLLDL
DADPEAVARVLATDPALAPAVAATPGIRVPGAADGFELVLRATLGQQVSVAAARTAAGRL
TAALGEPVPWQHDLLLFPTAEAVAERGHEVLRGPKRRIDAILGAAAALASGDVDVHVGRD
PAELRAELLGLTGIGPWTADYVLMRVLGAPDVLLTGDLILRKGAAGLGIADDIPALNERA
QAWRPWRSYAGMYLWRSSQA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgacagccatcgccgcacccgccgagcaggcactctggcgcgacaacgagcggtgctac
cgcgccgtcgcctcgcgcgactcccgcttcgacggccagttcgtcacggccgtgcgcacg
accggcatctactgccggccgtcctgcccagcgctcaccccgcggcaggagaacgtgcgg
ttctacccgaccgtcgccgcggcccaggccgccggcttccgtgcctgccggcgctgcctg
cccgacgccgtgcccggctcacccgagtggaacgtgcgcgccgacctggccgcacgggcc
atgcggctgatcgccgacggggtcgtcgagcgcgacggcgtgcccggcctggcccgccgc
ctcggctactccgagcggcagctcggccgggtcctcaccgccgaactcggcgcgggaccg
ctggcactggcccgcgcgcaccgggcgcactcggcgcggctgctcatcgagctgtccgag
ctgccgctgtccgacgtggcgttcgcggccggcttcgccagcgtccggcagttcaacgac
accatccgcgaggtcttcgcccgcactccgtcgcagctgcggacggccgccgccgcggca
cgccgccaggcaggcgccgccgagcccgaagccggcacggccgggacccggctgtccctg
cgactgccgttccgcccgccgttcgacgccgcagggctcctcggcttcttcgccgcccgg
gccgtgcccgcagtggagtccgtcgacgggcacagctacgcccgcaccctccggctcccg
cacggcgccgcgacggtgacgctgacgccgcaggacgggcacgtgcgctgcgacctgcgg
ctcgccgacgtccgcgacctcggcgcggccgtcacccgggcccggcgcctgctggacctg
gacgccgaccccgaggccgtcgcgcgcgtgctcgccaccgatccggcactggccccggcg
gtcgccgcgaccccgggcatccgcgtccccggcgccgccgacggtttcgagctggtgctg
cgcgccacgctcggccagcaggtctcggtcgccgccgcgcgcaccgccgccggccgcctc
accgcggcgctcggcgagccggtcccgtggcagcacgacctcctgctgttccccaccgcc
gaagcggtggccgagcggggccacgaggtgctgcgcggcccgaagcgccggatcgacgcc
atcctcggcgccgccgccgcgctcgcctccggtgacgtcgacgtgcacgtcggacgcgat
cccgccgagctgcgagccgaactcctcggcctcaccggcatcggtccgtggaccgccgac
tacgtgctgatgcgcgtcctcggcgctcccgacgtgctgctcaccggtgatctcatcctc
cgcaaaggcgcggccggcctcggcatcgccgacgacatccccgcactcaacgaacgcgca
caggcgtggcgcccctggcggtcctacgccggcatgtacctgtggcgctcgagccaagcc
tga
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