Amycolatopsis methanolica: AMETH_6027
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Entry
AMETH_6027 CDS
T03230
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NAD(P)(+))
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq00250
Alanine, aspartate and glutamate metabolism
amq00310
Lysine degradation
amq00350
Tyrosine metabolism
amq00650
Butanoate metabolism
amq00760
Nicotinate and nicotinamide metabolism
amq01100
Metabolic pathways
amq01120
Microbial metabolism in diverse environments
Module
amq_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
AMETH_6027 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
AMETH_6027 (gabD)
00310 Lysine degradation
AMETH_6027 (gabD)
00350 Tyrosine metabolism
AMETH_6027 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
AMETH_6027 (gabD)
Enzymes [BR:
amq01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
AMETH_6027 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
AMETH_6027 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
AMETH_6027 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AIJ26119
UniProt:
A0A076MYA1
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All DBs
Position
complement(6216880..6218220)
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AA seq
446 aa
AA seq
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MSEFSVVDPSSGEMIAKFENPTDADIEAQLGAAHAAFPVWAALDAGRRAEVVARLGELHL
ERRDELAAIIGREMGKPAEQALGEVDFSAAIYRYYADNAEQFLADEPIDLLDGAAGSAVV
HREALGVVMGIMPWNYPYYQVARFAAPNLALGNAVILKPAPQCPESALAIQEMVTEAGAT
PGAYSTVLATNDQALGIVADPRVVGVSLTGSERAGAAVAEVAGRNLKKVVLELGGSDPFI
LLGTDDLDATVDAAVAARLENAGQACNAAKRFIVVDELYDSFLTKFTDKLLAAEVAPLSS
EAAARRLAAQVRQAVDDGAELTCRGRRDGAYHPPAILTDIPSSSLAYREEFFGPVAAVHR
VDSEDAAVVLANDTPFGLGSYVYTRDPEQGRRVARRLDAGMVFINAAGTEGAELPFGGIK
RSGFGRELGRYGIDEFVNKKMVREIW
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgagttcagcgtggtcgatccgtcgagcggtgagatgatcgccaagttcgaaaac
cccacggatgccgatatcgaggcccagctcggcgccgcccatgccgctttcccggtctgg
gctgctctggatgccggacggcgagcagaagtcgtggctcggctcggtgaactgcacctg
gaacgacgggacgaactcgccgccatcatcggcagagagatgggcaagcccgcagaacag
gccttgggtgaggtcgacttctcggcagcgatctaccgatactacgccgacaacgccgaa
cagttcctggccgacgaaccgatcgacctgctcgacggcgccgccggttcagccgtggtc
caccgagaggctctcggcgtggtcatgggcatcatgccatggaactacccgtactatcag
gtagcccgattcgccgcacccaacctcgcgctgggcaacgcagtcatcctgaaacccgca
ccgcagtgcccggagtcagcactggcgatccaggagatggtgaccgaggcgggagccacg
cccggcgcttactccaccgtcctcgccaccaacgaccaggcgctcggaatcgtcgccgac
ccgcgggtcgtcggcgtatcgctgaccgggtcggagcgggccggcgctgccgtcgccgaa
gtcgcgggacggaacctgaagaaggtcgtgctcgaactcggcgggtcggacccgttcatc
cttctggggaccgacgatctcgacgcgacggtcgacgcagcggtggcggcacgtctcgag
aacgctggccaggcatgcaatgccgctaaacggttcatcgtcgtcgatgaactgtacgac
tcgttcctgaccaagttcacggacaagttgctggccgcggaggtggcaccactgtcctcc
gaagccgctgcgcgccgcctcgcggcgcaggtgcgacaggctgtcgacgatggtgccgaa
ctcacctgtcgcggccgtcgtgatggagcctaccacccgcccgccatcctgaccgacatc
ccgtcgtcgtccttggcctatcgcgaggagttcttcggcccggtcgccgccgtccaccgg
gtcgattccgaggacgctgccgttgtgctggccaacgatacccccttcggtctcggctcg
tacgtctacacccgcgaccccgaacagggccgacgcgtcgctcgccgcctcgacgccggg
atggtcttcatcaatgcggcgggtaccgaaggcgccgaactacctttcggcggcatcaaa
cgttcgggcttcggccgggagttggggcggtacggcatcgacgagttcgtgaacaagaag
atggttcgcgagatctggtga
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