Acaryochloris marina: AM1_3593
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Entry
AM1_3593 CDS
T00617
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amr
Acaryochloris marina
Pathway
amr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AM1_3593 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amr03021
]
AM1_3593 (rpoC1)
03400 DNA repair and recombination proteins [BR:
amr03400
]
AM1_3593 (rpoC1)
Enzymes [BR:
amr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AM1_3593 (rpoC1)
Transcription machinery [BR:
amr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AM1_3593 (rpoC1)
DNA repair and recombination proteins [BR:
amr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AM1_3593 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ABW28583
UniProt:
B0C2D1
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All DBs
Position
3644614..3646485
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AA seq
623 aa
AA seq
DB search
MPKLEQRFDYVKIGLASPERIRQWGERTLPNNQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGI
PSYMATLLDMPLRDVEQIVYFNAYVVLDPGNADTLSYKQLLTEDQWIEIEDQIYSEDSQL
EGIEVGIGAEAVQRLLQDIKLETEAETLREDIGNAKGQKRAKLIKRLRVIDNFVGTGSQT
DWMVLSVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIGQGLVNNIKAAKRLIQRNDPVIWDVLEE
VIEGHPVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSI
EAQSEARLLMLASNNILSPATGRPIVTPSQDMVLGAYYLTADNPGRQNGAGKYFAGLDDA
IMAYEQQQVDLHAYVWVRFDGPVDDGEDDVEPEVETSADGVVTQTYPSRRIRKDADGTLI
SQYIRTTPGRIIYNKTIQDSLAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagctcgaacaacgatttgactacgtcaaaattgggctagcctctccggaacgg
atccggcagtggggggagcgtaccttacccaataaccaagtggtcggtgaagtcaccaaa
ccagaaaccatcaactaccgaaccttaaaaccggagatggatggtctattttgtgagcgg
atctttggtcctgccaaggattgggaatgtcactgtggcaaatataagcgggttcggcac
cgaggtatcgtctgtgagcgctgtggcgtcgaggtgactgaatcgcgggtgcgacgacat
cgcatgggctacattaaattagccgctcccgtgacccacgtttggtacttgaaaggtatt
cctagctatatggctacgttgctggacatgcctctgcgggatgtagagcagattgtttat
ttcaatgcctatgtggttttggatccaggcaacgcagataccttgtcctataagcaactc
ctaacggaagatcagtggatagaaattgaggatcaaatctatagcgaggattctcagcta
gaagggattgaagtcggcattggtgctgaggctgtgcaaagactgctccaggacatcaag
cttgaaacagaagctgaaactctgagagaggacattggcaacgctaagggccagaaaaga
gccaagctgattaagcgattgcgggtcatcgataactttgtaggaacaggctctcaaacc
gattggatggttctgagcgtgatcccagtgattccaccagatttgagaccaatggtgcag
ttggatggtggacgatttgccacctctgacctcaatgatctgtaccgtcgagtgattaac
cgcaataatcgcctcgctcgattgcaagagattttagctccagagattatcgttcgaaat
gagaaacggatgttgcaagaggcggtggatgccttgatcgacaacggccgccgaggtcga
accgtggtgggagcgaataaccgtcccttaaaatccttgtctgatatcattgaaggaaag
caaggtcgtttccgtcagaaccttctgggtaaacgggttgactactccggtcgttctgtg
atcgtcgtgggtcccaagctaaaaatgcaccagtgcggcttacccaaagagatggcaatt
gaactctttcagccctttgtcattcaccgtttgattggccaaggtttagtgaataacatc
aaagcggctaagcgtctgattcagcgtaatgatcccgttatctgggatgtgttggaagaa
gtgattgaagggcatccagtgatgctcaaccgggcgccgaccttgcaccgattgggaatt
caagcgtttgaacccatcttggtggatggtcgagcgattcagctacatcccttggtttgc
ccggcctttaacgccgactttgacggagaccaaatggcggtgcatgtgcccctgtccatt
gaagctcagtctgaagcccgtcttctgatgttggcctcgaataatattctgtcgccagca
acagggcgtcccattgttacgcccagtcaggacatggtgttgggagcttactatctgact
gcagataatccaggccggcaaaatggggcaggcaagtattttgcgggtttagacgatgcc
attatggcttatgagcagcagcaagttgacttacatgcctatgtttgggtgcggtttgac
ggcccagtagatgatggcgaagacgacgttgagcctgaggtagaaacctctgcggatggc
gttgtcactcaaacttacccttctcgtcgaattcgcaaggatgcagacgggacattgatt
tcgcaatatattcgcacgacccctggtcgcattatttacaacaaaaccatccaggattca
ttggctagctaa
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