Anopheles marshallii: 128708189
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Entry
128708189 CDS
T10928
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
amrs Anopheles marshallii
Pathway
amrs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amrs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128708189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amrs03019
]
128708189
03041 Spliceosome [BR:
amrs03041
]
128708189
Messenger RNA biogenesis [BR:
amrs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128708189
Spliceosome [BR:
amrs03041
]
Complex B
Other components
Prp19-related factors
128708189
Complex C
128708189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_12
Suf
TPR_2
TPR_8
TPR_10
Mad3_BUB1_I
ARM_TT21_C
PPR
NRDE-2
ARM_TT21
SNAP
Motif
Other DBs
NCBI-GeneID:
128708189
NCBI-ProteinID:
XP_053659125
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Position
2:90393552..90396221
Genome browser
AA seq
867 aa
AA seq
DB search
MPIASEVNLAEVFFNEEDLPYEEEILRNAYSVKHWMRYVEHKRNAPRFVINTVFERALKE
LPGSYKLWYNYLKTLRKQVKGKCITDSEYEEVNNAFERALVFMHKMPRIWMDYCAFMTFQ
CKITRTRQVFDRALRALPITQHHRIWPLYLEFLKCFDIPETAVRVWRRYLKLCPEDAEEY
VEFLQSIGHLDEAAQQLASIVDNENFVSKHGKSNHQLWNELCELISKNPNKVHSLNVDGI
IRGGLRRYTDQLGHLWNSLAGYYVRSGLFDRARDIYEEAIQTVTTVRDFSQVFDAYAQFE
ELSLSKVMEMLGSNPNPTEDNEIDVELRMARFEYLMERRLLLLNSVLLRQNPHNVAEWHK
RVELYEGKPHEIINTYTEAVHTVQPKLAVGKLYTLWVAFAKFYETNKQLADARIVFEKAV
QVDYLKVDELASVWCEWAEMEIRQEQYDEALRIMQRATAMPKRKVAYHDDTETVQMRVYK
SLKLWSMYADLEESFGTFKTCKQVYDRIIDLKICTPQIIINYGMFLEEHNYFEEAFKAYE
KGIALFKWPNVYDIWNTYLTKFLNRYGGQKLERARDLFEQCLDGCPSELAKNLYLLYAKL
EEQHGLARHAMAVYERATTAVKEEEMYAMFNLYIKKAAEIYGIPRTRQIYEKAIEVLPEA
DSRKMCVLFAEMETKLGEIDRARAIYAHCSQMCDPRITADFWQTWKEFEIRHGNEDTMRE
MLRIKRSIQATYNTQISMMSAALINAAVTTGEPPKDAMRALEVKAAETTARAIAAVGASG
GNIMFVRGETQGGTAKDDRVVNPDEIDIDDDEEDDEEDEEENAAEGDGVGGADVSKKIPI
ERQSIPAKVFGSLRREVEDKEDNEMDE
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgcatcggaagtgaacctggcggaagtattcttcaacgaagaagacctgccg
tatgaagaggaaattcttcgtaatgcctactccgtgaagcactggatgcgctacgtggag
cacaaacggaacgcaccacgattcgttatcaacaccgtgtttgagcgagcgctaaaggaa
cttcccggttcgtacaaactctggtacaactatctcaaaacactgcggaagcaggtgaag
ggcaaatgcattacggacagcgagtacgaggaggtgaacaatgcgtttgagcgcgcgctc
gtgttcatgcacaagatgccccgcatctggatggattactgtgcgttcatgacgttccag
tgcaagataacgcgtacgcggcaagtgttcgaccgtgcgctccgagcccttcccatcacc
cagcaccatcgcatttggccactgtacttggagtttttgaaatgcttcgacatacccgaa
acggcggtccgggtatggcgccgctacctaaagctatgtcccgaggatgccgaagagtat
gtcgagttcttgcaatcgattggtcacctggacgaagcggcccaacagctggccagcata
gtcgataacgaaaactttgtgtccaagcacggcaaatcgaaccatcagttgtggaacgag
ctttgtgagctgatttccaaaaatccaaacaaagtgcactcgctgaacgtggacgggatt
atccggggtggactgcggcgctacaccgatcagttgggccatttatggaactcgctcgcg
gggtactacgtgcgcagtggactgtttgatcgggcacgagacatctacgaggaagccatc
caaacggtaacgactgtgcgcgacttcagtcaggtgttcgatgcgtacgcacaatttgaa
gagctaagtcttagcaaggtgatggagatgttggggagcaacccgaatcccaccgaagac
aatgagatagatgtggagctacggatggcacggttcgagtatctcatggaacgtcgattg
ttgctgctgaacagtgtgcttctgcgccagaacccgcataacgttgccgagtggcacaag
cgggtagagctgtacgaaggcaaacctcacgaaatcatcaacacctacacggaagcggtg
catacggtacagcccaagctggcggtcggaaaactctacacactgtgggtggctttcgca
aagttttacgagaccaacaaacagctggcggatgctcgtatcgtgttcgaaaaggcggtt
caagtcgactatctgaaggtggatgaactggccagtgtttggtgcgagtgggcagagatg
gagattcgccaggaacagtatgatgaagcgctacgcatcatgcaacgggcaacggcaatg
ccgaaaagaaaagtggcctaccacgatgacacggagacggtgcagatgcgggtgtacaag
tcgctcaaactgtggtctatgtatgcggacctggaggaaagcttcggtacgttcaagacg
tgcaagcaggtgtacgatcgtatcattgatttgaaaatctgcacaccgcaaatcatcatc
aattacggcatgtttctggaggaacacaactacttcgaggaagcgttcaaggcgtacgag
aagggtattgctttgttcaaatggcccaatgtgtacgacatctggaacacgtacctgacc
aagttcctgaaccgctacggaggtcagaagctggaacgagctcgcgatctgttcgagcag
tgtttggacggttgtccatcggagctggccaaaaacctgtacctgttgtacgcgaagttg
gaggaacagcacggtctggcacgacatgcaatggcggtatacgagcgggccaccaccgcc
gtcaaagaagaggaaatgtacgcaatgttcaatctctacatcaagaaggcggccgaaatc
tatggcattccgcgtacgcgccagatctacgagaaagcgatcgaagtactgccggaggcg
gactcgcggaagatgtgcgtcctgtttgccgagatggaaacgaagctgggtgaaatcgat
cgcgctcgggcaatctacgcccactgcagccaaatgtgcgatccgcgcataacagccgac
ttctggcagacgtggaaagagttcgaaattcggcacggcaacgaggacacgatgagggaa
atgttgcgcattaagcggtcgattcaagcgacgtacaacacccaaatcagcatgatgtca
gcagcactgatcaacgcagcggttacgaccggcgaaccaccgaaggatgcgatgcgcgca
ctggaggtaaaggcggccgaaacgacggctcgggcgatagcagcagttggtgcgtctggc
ggcaacattatgttcgtgcgcggtgaaacacaaggaggaaccgcaaaggacgatcgtgtg
gttaatcccgacgaaatcgacattgacgacgatgaggaggatgatgaggaagatgaggaa
gaaaatgccgcagaaggtgatggtgttggtggtgcggatgtcagcaaaaagatacccatc
gagcgccagagcattcctgcgaaagtattcggcagtcttcgtcgggaagtggaagataag
gaagataacgaaatggatgaataa
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