Anopheles marshallii: 128715339
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Entry
128715339 CDS
T10928
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amrs Anopheles marshallii
Brite
KEGG Orthology (KO) [BR:
amrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amrs03016
]
128715339
Enzymes [BR:
amrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128715339
Transfer RNA biogenesis [BR:
amrs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128715339
Prokaryotic type
tRNA splicing ligases
128715339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
128715339
NCBI-ProteinID:
XP_053666197
LinkDB
All DBs
Position
3:complement(17553885..17555482)
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AA seq
506 aa
AA seq
DB search
MVVREYNEEMKYIERLSPNSFLIKKGFQSNMNVEGVFYANSRLEKLMFDELRNACRPGMI
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMSDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPGKVSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KYAASKMGIEELGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SPEGQNYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKME
EHMVNGRPKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGM
VETFGSTCHGAGRSLSRAKSRRNLDYKDVLRDLEEKGISIRVASPKLVQEEAPDSYKDVR
DVVQTCHDVGISNKSIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccgagagtataacgaagagatgaagtacatcgaacggctatcgccgaacagc
ttcctgattaaaaaaggcttccaatcgaacatgaacgtggaaggcgtattctatgccaat
agtcggctggaaaagctaatgttcgacgagctgcgcaacgcctgccgacctgggatgatt
ggtggatttcttcccggagttaaacagatagcgaacgtggccgctttaccaggaattgtt
ggacgttccgtcggtcttccggatattcattccggttatgggtttgcaatcggtaacatg
gcggcattcgatatgagcgatccgacctcaattgtttcacccggtggtgtcggattcgac
atcaattgtggtgttcgtttgctgcgaactaatctgttcgaaaaggatgtacaaccggtg
aaggaacagcttgctcaaagtctcttcgaccacattcccgtaggtgttggatcgaagggt
atcattcccatgaacgcgcatgatctggaggaagccctggaaatgggcatggattggtcg
ctgcgtgagggatacgtttgggccgaagataaggagcactgcgaagaatacggccgcatg
ttgaatgccgacccgggcaaggttagcctgcgggcgaagaaacgtggtctgccacagctc
ggtacattaggcgccggtaatcattatgctgaaatacaggtggtggaagaaatttacgat
aaatacgccgctagcaaaatgggcatcgaagagctcggacaaatttgcgtcatgattcac
tcgggaagccgtggttttggccatcaggtagcaaccgatgcgctggttgagatggaaaag
gccatgaagcgggacaagattgaaacaaacgatcggcagctggcgtgtgcgcgtatcaat
agcccggaaggtcaaaactatctgaaagccatgtcggcagctgccaactttgcctgggtg
aaccgcagctcaatgacgttccttacaaggcaagcgtttgcgaaacaattcaacaccacg
ccggacgatttggatatgcacgttatctacgatgtttcgcacaacgttgccaaaatggag
gaacacatggtgaatggtagaccgaagcaactgctcgttcaccggaaaggatcgactcgt
gcattcccaccacatcatccgctaattccagtggattatcagcttaccggtcaaccggtg
cttgtcggtggatcgatgggcacgtgcagcttcgtgctgacgggtaccgaaacgggcatg
gtggaaacattcggttcgacatgtcacggtgccggtcgcagtctgtcccgtgccaaatcg
cgccgaaatctcgactacaaggacgttctgcgggatctggaagagaaaggcatttcgatt
cgtgtcgcatcaccgaagctggtgcaggaggaagcaccggattcgtacaaggatgttcgg
gatgtggttcaaacttgccacgatgtaggtataagcaataaatcaatcaaactacgtccg
attgctgttattaaaggttaa
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