Actinoplanes missouriensis: AMIS_22700
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Entry
AMIS_22700 CDS
T01795
Name
(GenBank) putative RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ams
Actinoplanes missouriensis
Pathway
ams03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ams00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMIS_22700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ams03019
]
AMIS_22700
03009 Ribosome biogenesis [BR:
ams03009
]
AMIS_22700
Enzymes [BR:
ams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMIS_22700
Messenger RNA biogenesis [BR:
ams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMIS_22700
Ribosome biogenesis [BR:
ams03009
]
Prokaryotic type
rRNA helicases
AMIS_22700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
Cas3-like_C_2
CreS_N
Motif
Other DBs
NCBI-ProteinID:
BAL87490
UniProt:
I0H3A3
LinkDB
All DBs
Position
complement(2355910..2357562)
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AA seq
550 aa
AA seq
DB search
MTESGFADLQLRPELLRALSDLGYEEPTPIQAEAIPPLLDGRDVLGQAATGTGKTAAFAL
PVLQRLAGVTSPTPAALVLVPTRELAMQVSQAFHRYARDLGTRVVPIYGGQPIGRQLQAL
ERGVDVVVATPGRALDHISRGTLDLSGVRTVVLDEADEMLDMGFAEDIEAILEETAEERQ
TVLFSATMPGRIDAIARRHLREPVRIQMGRAEPEPGEAPLVRQSAYVVARAHKPAALGRV
LDVEAPTAAIVFCRTREEVDQLTETLNGRGQRAEALHGGMSQEHRDRVVNRLRDGRADLL
VATDVAARGLDIDRLSHVVNYSLPAAPETYVHRIGRVGRAGREGTAITLVEPREHRMVKA
VERTTGQRIHLQKVPTVADLRTRRLELTRAALQETLLTDDLERFRVVLETLTDEFDVMEV
ALAAVKLAHELNGGDLDDEQDIPETALRPERDPRRDNARPAGRGGRNNGPTARLFINSGR
SNRIRPQDLVGAITGETRLSGRDIGAIEIADRFSLVEVPADAAEEVITALRQASIRGRKV
LARRDRDRRP
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtccggcttcgccgacctgcagctgcgcccggagttgctgagggcactcagc
gacctcgggtacgaggagcccacgccgatccaggcggaagccatcccgcccctgctcgac
ggccgtgacgtgctcggacaggcggcgacgggcaccggcaagacggccgcgttcgcgctg
ccggtgctgcagcgcctggccggcgtcacctcgcccacacccgcggcgctcgtcctggtg
ccgacccgagagctcgccatgcaggtctcccaagccttccatcggtacgcccgggacctc
ggcacccgggtcgtcccgatctacggcgggcagccgatcggacgacagctgcaggccctc
gagcgcggcgtcgacgtggtggtcgccacaccgggccgtgctctcgaccacatctcccgg
ggcacgctcgacctgagcggcgtccgcacggtggtcctcgacgaggccgacgagatgctc
gacatgggcttcgccgaggacatcgaggcgatcctcgaggagaccgccgaggaacggcag
acggtgctcttctccgcgacgatgccgggacggatcgacgccatcgcgcggcggcacctg
cgggagccggtccggatccagatgggccgtgccgagccggagcccggtgaggcgccgctg
gtccggcagagcgcctacgtggtggcccgcgcgcacaaacccgccgctctcggccgggtg
ctggacgtcgaggcgcccaccgcggcgatcgtcttctgccgtacccgggaagaggtcgac
cagctcaccgagacgctgaacgggcgcggccagcgggccgaggcgctgcacggcgggatg
agccaggagcaccgcgaccgggtcgtcaaccggctccgcgacggccgggccgacctgctg
gtcgccaccgacgtggcggcccgcggcctggacatcgaccggctcagccacgtggtcaac
tacagcctgccggcggcgccggagacgtacgtgcaccgcatcggccgggtcggccgcgcc
ggccgcgagggcaccgcgatcaccctggtcgagccgcgcgagcaccggatggtcaaggcg
gtggagcgcaccaccgggcagcggatccacctgcagaaggtgccgaccgtcgccgacctg
cgcacccggcggctcgagctgacccgcgccgcgctgcaggagaccctgctcaccgacgac
ctggagcggttccgggtggtgctggagacgctcaccgacgagttcgacgtgatggaggtc
gcgctcgccgcggtgaagctggctcacgagctgaacggcggggacctcgacgacgagcag
gacatcccggagacggcgctgcggccggagcgggatccgcgccgggacaacgcccgtccg
gcgggtcgtggcgggcgcaacaacgggcccaccgcccggctgttcatcaactcgggacgc
agcaaccggatccggccgcaggatctggtcggcgcgatcaccggcgagacgcggctgagt
gggcgggacatcggggcgatcgagatcgccgaccggttctcgctggtggaggtcccggcg
gatgcggccgaagaggtgatcacggcgctgcgtcaggcgtcgatccgcggtcgtaaggtg
ctggcgcgccgcgaccgcgaccgccgcccctga
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