Actinoplanes missouriensis: AMIS_5950
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Entry
AMIS_5950 CDS
T01795
Symbol
rpoC
Name
(GenBank) putative RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ams
Actinoplanes missouriensis
Pathway
ams03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ams00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMIS_5950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ams03021
]
AMIS_5950 (rpoC)
03400 DNA repair and recombination proteins [BR:
ams03400
]
AMIS_5950 (rpoC)
Enzymes [BR:
ams01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMIS_5950 (rpoC)
Transcription machinery [BR:
ams03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMIS_5950 (rpoC)
DNA repair and recombination proteins [BR:
ams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMIS_5950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAL85815
UniProt:
I0GYH8
LinkDB
All DBs
Position
644650..648540
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDMSTIENEIFAEKRQSENGRDSEIEKRAAKLEQD
LAELEAEGAKADVRRKVKEAGEREMRQIRDKAQREIDRLDEVLDTFRKLDSKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALLENMDLDAEAENLREIIRTGKGQRKIRALKRLKVVA
AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPRLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTPGAKGEGR
VFSSDAEARMAYDNGELHLQAPVKIRLREVIGVDNGAKGEAWTAPEDWTEGEPVLVETTL
GRVIFNETLPVGYRYVNYEIRKGQLSAIVNDLAERFPKVVLAATLDALKEAGFHWATWSG
VTIGMGDVIGPPRKPEILARYQVEADRIDKQYQRGLMTAEERRGELIEIWTKATNEISKE
METALPQENPLWVMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPITSSYREGLTVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQVGEREPDG
TLVVHTHAETGVHARTLADDIDDANGNRVVSRGDDLNSIMVDKLVAAGVENVRVRSVLTC
ESKLGVCAACYGRSLPTGKAVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQG
LPRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIVIPDDGSDEIVYDKISKRVKLR
AHDGDHVNVGEKLTEGTIDPHELLRIMGPRAVQVHLTSEVQEVYRSQGVLIHDKHIEIII
RQMLKRVTVIDSGATEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATD
SWLSAASFQETTRVLTDAAINSRSDSLVGLKENVIIGKLIPAGTGISKYRNIRVEPTEEA
KAKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagttgcgcatcggccttgctaccgctgacgacatc
cggcagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccggtccaaggtccgccgtgagcgcatgggtcacatcgagctggccgcgtcg
gtgacccacatctggtacttcaagggcgtcccgagccggctgggttacctgctggacctc
gcgcccaaggacctcgagaagatcatttacttcgcttcgtacgtggtgacgagcgtggac
gccgaggcgcgtcaccgcgacatgtcgaccatcgagaacgagatcttcgccgagaagcgc
cagtcggagaacggccgtgactcggagatcgagaagcgggccgccaagctggagcaggac
ctggccgagctcgaggccgagggtgccaaggccgatgtgcgccgcaaggtcaaggaagcc
ggcgagcgcgagatgcgccagatccgggacaaggcgcagcgcgagatcgaccgcctcgac
gaggtgctcgacaccttccgcaagctcgactccaagcagctggtcaccgacgagctgctc
taccgcgagctccgggaccgcttcggtgagtacttcaccggcggcatgggcgcggaggcc
atcaaggccctcctcgagaacatggacctggacgccgaggcggagaacctccgggagatc
atccgcaccggtaagggccagcggaagatccgggcgctcaagcggctcaaggtcgtcgcg
gcgttcctgaacacccgcaactcgccgctcggcatggtgctggactgcgttccggtcatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccaccagcgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtccgggtaaccgcccgctcaag
tcgctctccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcggctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
ccggtcgtgtgggacgtgctcgaagaggtcatcagcgagcacccggtgctgctgaaccgc
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgctcgtctgcacggcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggtctgtaccacctgacccacctcacgcccggcgccaagggcgagggccgg
gtgttcagctcggacgccgaggcccggatggcgtacgacaacggcgagctgcacctgcag
gcgccggtgaagatccgtctgcgtgaggtcatcggtgtcgacaacggcgccaagggcgag
gcctggaccgctccggaggactggaccgagggcgagcccgtcctggtcgagaccaccctg
ggccgcgtgatcttcaacgagacgctcccggtcgggtaccggtacgtcaactacgagatc
cgcaagggtcagctgtcggcgatcgtcaacgacctcgccgagcgcttcccgaaggtcgtc
ctcgcggcgaccctggacgcgctcaaggaggccggcttccactgggccacctggtccggt
gtgacgatcggcatgggcgacgtcatcggtcccccgcgcaagccggagatcctcgcccgc
taccaggtcgaggcggaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gaacgtcgcggcgagctcatcgagatctggaccaaggcgaccaacgagatctccaaggag
atggagaccgcgctgccgcaggagaacccgctctgggtgatgatcaactccggcgcccgc
ggtaacctcctccagctccggcagatcgccgcgatccgtggtctggtggccaaccccaag
ggtgagatcatcccgcggccgatcacctcgtcgtaccgcgagggtctgaccgtgctggaa
tacttcatctccacccacggcgcccgtaagggtctggccgacaccgcgctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgcgcgatcccgatgcaggtgggcgagcgggagccggacggc
accctggtcgtgcacacgcacgcggagaccggcgtgcacgcccgtaccctggccgacgac
atcgacgacgccaacggcaaccgtgtggtgtcgcgtggcgacgacctcaactcgatcatg
gtcgacaagctggtcgccgcgggcgtggagaacgtccgggtgcgcagcgtgctgacctgt
gagtcgaagctgggcgtctgcgcggcctgctacggccgttcgctgccgaccggcaaggcg
gtcgacatcggcgaggccgtcggcatcatcgcggcccagtccatcggtgagccgggtacc
cagctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggt
ctgccgcgtgtgcaggagatcttcgaggcccgcgtgccgaagggtaaggcgcccatcgcc
gacacccccggccgcatccgcatcgaggacggcgagcgttcgcggaagatcatcgtgatc
ccggacgacggcagcgacgagatcgtgtacgacaagatctcgaagcgcgtcaagctgcgg
gcgcacgacggcgaccacgtcaacgtcggcgagaagctcaccgagggcaccatcgacccg
cacgagctgctgcgcatcatgggtccgcgcgcggtccaggtccacctgaccagtgaggtc
caggaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatc
cgccagatgctcaagcgggtgacggtcatcgactccggcgcgaccgagttcctgccgggt
gtgctggtcgaccgggcgctcttcgagtcggagaaccgccgtctcgtgggcgagggtggc
gagcccgccgccggccgtccggtgctgatgggtatcaccaaggcctcgctggcgaccgac
tcgtggctctccgcggcctccttccaggagaccacccgggtgctcaccgacgctgcgatc
aactcgcgcagcgactcgctggtgggcctcaaggagaacgtcatcatcggtaagctcatc
ccggccggtaccggtatcagcaagtaccggaacatccgggtcgagccgaccgaggaggcc
aaggccaaggtgtactcgatgaccgggtaccccgagaccgactacggcttcgggccggcc
agcgggcaggctgtgccgctggacgacttcgacttcgggtcgtaccgctaa
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integrated database retrieval system
