Alkaliphilus metalliredigens: Amet_0323
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Entry
Amet_0323 CDS
T00551
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amt
Alkaliphilus metalliredigens
Pathway
amt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amet_0323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amt03021
]
Amet_0323
03019 Messenger RNA biogenesis [BR:
amt03019
]
Amet_0323
Transcription machinery [BR:
amt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Amet_0323
Messenger RNA biogenesis [BR:
amt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Amet_0323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
SAP
S1CSD-TOTE-2
AAA_22
SAP_new25
DUF5855
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABR46553
UniProt:
A6TK35
LinkDB
All DBs
Position
361368..362801
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AA seq
477 aa
AA seq
DB search
MDKTELATKKLEDLRQIARALGIKNIGKYKKSELMERIIGQEPTEDKGTTIEEIEQPIEP
SQATQEPEKTSKPGVQEIPPEKKDSLVVQQAKEQGLPSHLTDEISEDESVNIAQGILEIH
SDGYGFLRRYNYLSSDGDIYISPSQIRRFNMRTGDKITGITRPPKSGEKFKALLYVKQIN
DLNPETATRRPNFEDLTPIYPNKRINLELNTKELSTRLIDLIAPIGKGQRGMIAAPPKAG
KTILLQQVANSVALNYPETEIIVLLIDERPEEVTDMQRSIKGEVVYSTFDELPSHHVKVA
EMVLSRAQRLVEHGKDVVILLDSITRLARAYNLTIPTTGRTLSGGLDPGALHKPKRFFGA
ARNLEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMELHLDRKLSEKRIFPAVDINKS
GTRREELLLSQRELETIWKIRRAMGNSSPQDVTEKIIASLLETKSNHEFVEMLAKRL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtggataaaacagaattagccacgaagaagcttgaagacctgcggcaaattgccagggcc
ttgggcattaaaaacataggaaaatataaaaaaagtgaactgatggaacggatcattgga
caagaacccactgaagacaaaggaacaacgatagaagaaatagaacagcccatagagcct
agtcaagcaacccaagagccagagaaaacaagtaaaccgggagttcaagaaataccacca
gaaaaaaaggatagtctcgtggttcaacaggcaaaggaacaagggttgccctcacatctg
acagatgaaatttccgaggatgaatcagtgaatatagcacaaggtattttagaaatacat
agtgatggatatggttttctaagaaggtataactatctatccagtgatggagacatttat
atttccccttctcaaattagacggtttaatatgagaactggagataaaatcacaggtatt
acaagaccccctaaaagtggcgaaaagtttaaagctcttctatatgtgaagcaaatcaat
gacttgaatccagaaacagccacccgtagaccaaactttgaagatctgactcctatatac
cccaataaacgaattaatttagaactgaatacaaaggaattatctacccgattaattgac
ctgattgcaccgattggaaaaggtcaaaggggaatgattgcagcaccaccaaaggcagga
aaaaccattttactgcagcaggtggccaatagtgttgcccttaattatcctgagacagaa
ataattgttttactgatagatgaacgaccagaggaagtaacggatatgcaacggtcaatc
aaaggcgaagtggtgtactcaacatttgatgagcttcctagtcatcatgtcaaggtggcg
gaaatggtactgagccgtgcccaaagacttgtggagcatgggaaggacgttgttatttta
ttagatagtattacaaggctggccagggcttacaacctgacgattcctaccacaggaaga
actctatctggaggattagacccaggggcactacacaaacccaagcgtttctttggtgcc
gcacggaatcttgaagagggggggagcttaaccattattgccacggccttgattgaaaca
ggcagtcgaatggatgaagttatttttgaagaatttaagggaacgggaaatatggagctc
catttagaccgaaagctttcagaaaaacgtatcttccctgcggttgacattaacaaatct
ggaacaaggcgggaagaactacttttgagccagcgtgagcttgaaaccatctggaaaatc
cgccgagctatgggtaattcatctcctcaggatgtcactgagaagattattgcctcccta
ctggaaaccaagagcaatcacgaattcgtagaaatgttagccaagcgtttatag
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