Alkaliphilus metalliredigens: Amet_4220
Help
Entry
Amet_4220 CDS
T00551
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
amt
Alkaliphilus metalliredigens
Pathway
amt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Amet_4220
09124 Replication and repair
03420 Nucleotide excision repair
Amet_4220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amt03021
]
Amet_4220
03036 Chromosome and associated proteins [BR:
amt03036
]
Amet_4220
03400 DNA repair and recombination proteins [BR:
amt03400
]
Amet_4220
Enzymes [BR:
amt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Amet_4220
Transcription machinery [BR:
amt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Amet_4220
Chromosome and associated proteins [BR:
amt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Amet_4220
DNA repair and recombination proteins [BR:
amt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Amet_4220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
Helicase_C
ResIII
PhoH
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABR50300
UniProt:
A6TVT2
LinkDB
All DBs
Position
complement(4330376..4332721)
Genome browser
AA seq
781 aa
AA seq
DB search
MEEQREIKVSVGNLVEFVLRSGNLDSGFSGGSSAIEGTRAHQKIQKNYGENDTSEITLKY
SFDYQEHKMTVKGRADGIILEDEKVIIDEIKTVTKSLDEIEENDYPIHWGQAQCYAYIYA
KENNLEAIGVQLTYYQLETQEIKRFRRTITICELEAFFYDLIKQYFQWAHRIEKWEMKRD
LSIKDMKFPFEAYRKGQRELAVATYKTIRGKKKLFAQAPTGTGKTISTLFPGVKAMGEGM
TSKIFYLTAKTITRQVAEEAIVKIREKGLAYKTITLTAKDKICFEKVGSCNTDECRFAKG
HFDRLNEALSDVFDHEDAFTRDVMETYARKHHICPFEFSLELALWSDCIICDYNYVFDPR
VYLKRFFQEEGKNYTFLIDEAHNLVDRSRTMFSAELNKGTFLELKRVMKDKSPKVAKTLN
KLNSFMIKAKKNCGENEFYIQKEAPLEMDQLLRHFISEAAIWLKEGRGKGGYEALLELYF
SAFAFLRILEFYDDRYTTYVEKRDKDVVIKLFCLDPSYLLGQAVRRGGAAIFFSATLTPL
NYFRDILGGHEEDYQIQLSSPFDKENLKLMVANDISTKYKDRQESYEPIIKYIKEVVRGK
EGNYLVFFPSYEYLRRVLELFREACPDIKVLEQGTTMTEPEREGFLRQFKSKPSETLIGF
VVLGGIFSEGIDLTGNRLIGTIIIGVGLPQITRETDIVMNYFQEKKRPGYEYAYTYPGMN
KVLQAAGRVIRREKDRGVVFLIDERFTSYRYQRLFPKEWKHYLTISNRSTIDTLLEAFWS
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaacagcgggagataaaggtttctgtagggaatctagtggaatttgtactgcgt
agtggtaatctagacagtggtttttctggagggagtagtgccatagaaggcaccagagcc
catcaaaaaatacagaagaattatggggaaaatgatacttcagagattaccctaaagtac
agttttgattatcaagagcataaaatgactgtaaaaggccgagctgacggcataatccta
gaggatgaaaaagtcattatcgacgaaatcaaaacagtgacaaaatcccttgatgaaata
gaagaaaatgattaccccattcactggggacaagcccaatgctatgcatatatttatgcc
aaggagaacaatttagaagccataggggttcaattaacgtactatcaattggagacacag
gaaataaaaagatttagaaggacaataaccatctgtgaattagaggcatttttttatgat
ttaattaaacaatattttcaatgggctcatcggattgagaaatgggagatgaaaagggat
ttaagtattaaggacatgaaatttccatttgaagcctaccgtaaaggacaaagagagctg
gctgttgcgacgtataaaaccatcagaggaaaaaagaagctttttgcccaagccccaacg
ggtactggtaaaacaatatcaaccctctttcctggggtgaaggcgatgggagagggaatg
acatctaaaatattttatctaacagccaagaccattaccagacaggtggcggaggaggcc
attgtgaaaatcagagaaaagggactagcatataagaccatcaccttaaccgcaaaggat
aagatctgttttgaaaaggtaggtagctgcaatacagatgagtgtcgctttgccaagggg
cactttgaccggctcaatgaggccttatcagatgtatttgaccatgaagatgcctttaca
agggatgtgatggagacatatgctcgtaaacatcacatatgtccctttgagttttcatta
gaattggctttgtggagtgactgtattatatgcgactataattatgtctttgatcctcgt
gtctacttaaagcggttttttcaagaggaaggaaaaaactatacatttttaattgatgaa
gcccataatctagtggatcgctctagaactatgttttcagcggaactaaataaagggaca
tttttggaattaaagcgggtgatgaaagacaagagcccaaaggtagcaaagaccctaaac
aaattaaattcttttatgattaaagcaaagaagaactgtggagaaaatgaattttatatt
caaaaagaagctcctttagagatggatcagctccttagacatttcatatcagaggcagcg
atttggttaaaagaaggacggggaaaagggggttatgaggcgctattagagttatacttt
agtgcatttgccttcctgaggattttagagttttatgatgataggtatactacttatgta
gaaaaacgagataaggatgtggtgataaagctgttttgtttagatccttcttatctttta
ggacaagctgttagaagagggggagccgccatctttttttctgctaccctgaccccactc
aactactttagggacattttaggtggtcatgaagaagattatcaaatacaattaagctct
cccttcgataaagaaaacctcaaacttatggtggccaacgatatctcaacaaaatacaag
gatcgtcaggagagctatgaaccaattataaaatatattaaagaagtggttcggggtaag
gagggaaactacttggtattctttccctcctatgaatatttgaggagggttcttgaattg
tttagagaagcctgccccgatataaaagtactagagcagggaaccaccatgacggagccg
gagcgagagggatttttacgtcaatttaaatccaagcccagtgaaacattaattggattt
gtggttcttgggggaattttttctgaagggatcgacctaacaggaaacagattaatcggt
acaatcattattggtgtggggctgcctcaaataacaagggaaacggacattgtaatgaat
tactttcaagaaaaaaaacgtccgggttatgagtatgcctatacgtatccagggatgaac
aaagtacttcaagccgccggtagagtgattcgaagggaaaaggatagaggtgtcgttttt
cttattgatgaaagatttacttcctatagatatcaacgtctatttcctaaggagtggaaa
cactatttaacaatttccaatagaagtacaatagatactttgctagaggcattttggtct
gaataa
DBGET
integrated database retrieval system
