Alkaliphilus metalliredigens: Amet_4449
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Entry
Amet_4449 CDS
T00551
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
amt
Alkaliphilus metalliredigens
Pathway
amt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amet_4449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amt03021
]
Amet_4449
03400 DNA repair and recombination proteins [BR:
amt03400
]
Amet_4449
Enzymes [BR:
amt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amet_4449
Transcription machinery [BR:
amt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amet_4449
DNA repair and recombination proteins [BR:
amt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amet_4449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
INTS7_HB
Motif
Other DBs
NCBI-ProteinID:
ABR50521
UniProt:
A6TWF3
LinkDB
All DBs
Position
complement(4562865..4563812)
Genome browser
AA seq
315 aa
AA seq
DB search
MIEMEKPKVEVFEISDDSTYGKFVVEPLERGYGTTLGNSLRRIMLSSLPGAAVTSVKIEG
ILHEFSTIPGVKEDVTEIILNLKDLSIGIDGNEPKTLRIEMEGPGTVTAGDIIADADVEV
LNPDMYIATLDDNSKLNMEINIAKGRGYVSAENNKTAGMPIGVIPVDSIFTPVRKVSYFV
GNTRVGQVTDYDKLEIEVFTDGSIKPDEAISLAAKVMSEHLNLFITLKEDVSDVEIMVQK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVEELSLKSEEDMMKVRNLGKKSLEEVD
KKLEELGLGLRPSDE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatggaaaagccaaaagtagaagtgtttgaaatcagtgatgatagtacctat
gggaagtttgttgtagaacctttagaaagaggatacggaacgaccctaggaaactcattg
agaaggattatgttgtcatctttacctggagctgctgttacttccgttaagattgaaggg
attttacacgaattttcaacgattccaggagttaaagaagatgtaacagaaattatctta
aacttaaaggatctatccatcggaattgacggaaatgagcctaaaacccttcgtattgaa
atggaagggcctggtacagtgacagcaggggatatcattgctgatgctgatgtggaggtc
ttaaatccagatatgtacatcgctactttagacgataattccaaacttaacatggaaatt
aatattgcaaagggtagaggatatgtttcagctgaaaacaataagactgctggaatgcca
ataggtgtgattccagtagattcaatttttactcccgttagaaaggttagctactttgta
ggtaacacaagggttggtcaggtaactgactatgataagttagaaattgaagtctttact
gatggaagcattaaacctgatgaagctatctcactggctgctaaggtaatgagtgaacat
ttaaatttattcattactttaaaagaagatgtgagtgacgttgaaatcatggtgcaaaaa
gaagaagacaagaaggaaaaggttctagaaatgaccatagaagaattagacctttctgtt
agatcatataactgtctgaagcgggcaggcatcaatacagttgaggaattaagcttaaag
tcagaggaagatatgatgaaggtaagaaacttaggcaagaagtcgcttgaagaagtggat
aagaagctagaagagctaggacttggactaagacccagtgatgaataa
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