Alkaliphilus metalliredigens: Amet_4695
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Entry
Amet_4695 CDS
T00551
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amt
Alkaliphilus metalliredigens
Pathway
amt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amet_4695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amt03019
]
Amet_4695
03400 DNA repair and recombination proteins [BR:
amt03400
]
Amet_4695
Enzymes [BR:
amt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Amet_4695
Messenger RNA biogenesis [BR:
amt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Amet_4695
DNA repair and recombination proteins [BR:
amt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Amet_4695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
HTH_24
zf-CXXC
Helicase_Sgs1
HAGH_C
Motif
Other DBs
NCBI-ProteinID:
ABR50763
UniProt:
A6TX45
LinkDB
All DBs
Position
complement(4820955..4823135)
Genome browser
AA seq
726 aa
AA seq
DB search
MNIYKELKTYFGYDTFKEGQEKLVTGILAGKDVLGIMPTGGGKSLCYQLPAVMLEGVTIV
ISPLISLMKDQVDSLNEIGINATCINSTLDQEELMERIKEIKENQYKILFVAPERLNTNI
FRNTIRHITVSFVAIDEAHCISQWGHDFRPSYIEIPKFIKGFANRPMVAAFTATATKEII
IEIKKLIELQKPIEITTGFDRPNLFYQVSKAGNKFTYLMSYLKENFQSETGIIYCSTRKT
VESLVKKLKEKGFSVEGYHGGMNADIRMKNQEDFMYNRTRIIVATNAFGMGIDKPDVRFV
IHYNMPKNMEAYYQEAGRGGRDGEKSQCILMYSPSDVVKQKLIMENEYSSPERQALQYKN
LQYLIDFCHTNDCLRNKILTYFGEVIIEEDCGNCSNCLDRSEMIDITLEAQKVLSCIYRI
DQRYGVNIVTQVLRGSKNKKILQLGLDKVSTYNIMKNYSEQGVREIIMTLVARGYIHVTT
DKFPVLKLTAQCREILQGDVKIHHKKELVEAIGSKDEKERKSKKAVSDHFDEELLSQLKE
LRSTIASEKRVPPFMIFHDRTLKEMAACFPRTKEVFLTIDGVGMKKYENYGAQFMDLVEA
YCIENKIQGTESKVDEVVNTDESNSQVGAGLDRYQITYDCYLEGLSLPKIAHERNLKGTT
IIEHLKRCEDNGQEVDWGRFIDDPNKERAILDVIEEIGIMKLKPIKEALSPEVSYEDIRL
VIMKYH
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatataaagaattaaaaacatattttggatacgatacatttaaagaagggcaa
gaaaagctggtaaccggtatattagcaggtaaggatgtcctggggatcatgcccaccggc
gggggaaagtccctttgctatcaattgccggctgttatgctagagggagtcacgattgtg
atttccccattgatctcattgatgaaggatcaagtagattcattaaatgaaatagggatt
aatgctacatgtattaatagtaccctggatcaagaagaattaatggaaagaattaaggag
attaaggaaaatcaatataaaatactgtttgtggctccggagcgactcaataccaatatt
tttaggaataccataaggcatattacggtttcatttgttgcaattgatgaagcccattgt
attagtcaatggggtcatgattttcgaccaagctatattgaaattcctaaatttattaag
ggttttgcaaataggcccatggtggcagcctttacagctactgccacaaaggaaatcatc
atcgaaatcaaaaaactaatcgaattacagaagcccatcgaaatcacaacaggatttgat
cgacctaatttattttatcaagtaagtaaggcagggaataagttcacttatttgatgagt
tatttaaaggaaaatttccaaagtgagacggggatcatttactgttcaacgagaaaaaca
gtggagtcactagtaaagaaattaaaggaaaaaggtttttcagtggaaggataccatgga
ggcatgaatgcagatatacgcatgaaaaaccaagaggactttatgtacaatagaactaga
attattgtggcaaccaacgcctttggtatgggaattgacaagcctgatgtacgatttgtt
atccattataatatgcctaaaaatatggaagcatactaccaagaggcaggtagagggggc
agagatggggagaaaagccaatgtattttaatgtattcaccctcggatgttgtcaaacaa
aaattgattatggaaaatgagtatagttccccagaaagacaagcattacaatataagaat
ctacaatatctaatcgatttttgccacacaaacgattgtcttcgaaataaaatattaacc
tactttggtgaagtcatcatagaggaagattgtgggaattgcagtaattgtctagataga
tcggaaatgatagacatcaccctagaggctcaaaaagtgctatcttgtatttaccgtatt
gaccaacgatatggtgtcaatattgtcacccaggttttaaggggatcgaaaaacaaaaaa
atattacagctagggttagataaggtttccacctacaatattatgaaaaactacagtgag
cagggggtcagggaaatcattatgaccttagtggctagaggatatatacatgtgaccaca
gataaatttcctgtattgaagctgacagcccaatgtcgggaaatattgcaaggagatgta
aaaatacatcacaaaaaagaactagtagaggcaattggctcaaaagatgaaaaggaaaga
aaatcaaagaaagcagttagtgatcattttgatgaggaattattaagtcaattaaaggaa
ctgagaagcaccatagccagcgaaaaaagggtgcctccctttatgatttttcatgatagg
acattgaaagaaatggcagcttgttttccccggactaaagaggtatttctcacaatagat
ggtgtggggatgaagaagtatgaaaactatggagcacaatttatggatttagttgaagcg
tattgtattgaaaataaaatccagggaacggagtctaaagtagatgaggtagtcaacact
gatgaaagtaattcccaagtaggagcggggcttgatcgataccaaataacctatgactgc
tacttagaaggactgtctttacctaaaattgcccacgagagaaatctaaagggaaccaca
attattgaacatttaaaaagatgtgaggataatggacaagaagttgactggggaaggttt
atagatgatccaaataaggaaagagcaatattagatgtgatagaagagataggaatcatg
aagctaaagccaattaaggaggctttgtccccagaggtgagctatgaagacattcgtctg
gtgattatgaaatatcattag
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