Akkermansia muciniphila: Amuc_0808
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Entry
Amuc_0808 CDS
T00736
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amu
Akkermansia muciniphila
Brite
KEGG Orthology (KO) [BR:
amu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amu03019
]
Amuc_0808
Enzymes [BR:
amu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Amuc_0808
Messenger RNA biogenesis [BR:
amu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Amuc_0808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
SRP54
nSTAND3
T2SSE
ABC_tran
NACHT
AAA_25
PhoH
Retrotran_gag_2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ACD04641
UniProt:
B2UQA6
LinkDB
All DBs
Position
complement(947915..951610)
Genome browser
AA seq
1231 aa
AA seq
DB search
MNITYPDLPISRRRNDILAAMREHQVIVVVGETGSGKTTQLPKMAMELAGEARGRVGCTQ
PRRLAAASVSRRVAEELNCDLGGLVGYQVRFEEKAGLDTRLKFMTDGILLAETQHDPDLR
QYHTLILDEAHERSLNIDFLLGYLRLLLGRRRDLRLVISSATLDAGGFSEFFGGAPIIQV
EGRTYPVDFHYLPPLHDDEELPAHVARAVDWLDTLDDRGDVLVFLPGEREIREVAEKLEG
RNLRNTRILPLFARLGLANQQRIFHPEQGYRRIVLATNVAETSLTIPGIIYVIDSGLARV
SRYSPARQVQRLQIEPVSKASARQRAGRCGRVCEGVCIRLYSEKDWEDRPDFTDPEIRRS
ALAGALLRMKDLGLPEMPEFPLPDPPSSKLVTEGYRTLREIGALDKARQLTPVGRKLARL
PIDPRLARMLLEAQHEQALPEMLVIVAGLGIMDPRERPADAAQKADQAHAQWKEEDSDFL
SLLKLWKAAWQFREGRRWRKNQLRKWCGKNFLNFNRMMEWFNLWEDLSRLVRETLKCRIS
PLEEETERQASFAMIHRSILAGVPRQFGLWDADNREYRGAGGRSFGIFPGSGLFRRKKRS
EWVMGVELVDTTRLWMRRASILEPGWVELVAPHLCESHYSGARWDREQGAVYAVERVVCG
GLRIIDNRRVHYGRINPAHAREIMIREGLLGGGFRTKPACIRHLETLREEVRQIELKLRR
PDQVWCEEGVFEFFNRLVPPDCCTARAFLRWAAGMEKKNPEALHVPPQEAMYEFWGKDLL
DGFPDEITCKGAEYAVYYQNDPGAEDDGVTLGVHIDQLPDIPEWLPEWGVPGHLAQRAEC
LLRSLPKDLRVFLQPISQKAAYFAELRHGLEPDGPLAGKLAEFVEVETGKFCAPSFFDMN
RLPAELVTKIWVCDDEGEELAMGTDVAELNNRLGKKLSRRFQETAEDIVSVTGMKEWSCG
DLEYTVDVAGRPGYVALVDEGASVGVRVFEDELDAAESHREGCLRFMRLRQTDQLNHLRR
KFPLKLEGKLSLHMLGREPSTNAEDLVDVAAEIAMGRPLPRTAEQFAAAEMNLRQNLFDA
AHNVADIWELVAGTEHAVRDFTALQKGVRHTERITADLQRQLDWLLRPRFLWAHGAERLP
DLKRYMQGIAERIRRIGQQPLARELERLDLFERVYFPWHQVLKEHAGDLRWMQYGYLLEE
YRLAVFAPAISVKGRVSEKRLVASFEALSSQ
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaacattacttatccggatctacccatttcccgccgccggaatgacattctggcggca
atgcgggagcaccaggtcattgtcgtagtgggggagacgggatccggtaagactacccag
ctccctaaaatggccatggagcttgccggggaggcgcggggcagagtaggatgcacccag
cccagaaggctggctgctgcttccgtttcccgccgagtggcggaggaattgaactgcgac
ctgggaggtttggtgggttaccaggtgcgctttgaggaaaaagccgggctggatacgcgc
ctgaagttcatgacggatgggattcttctggcggaaacgcagcatgatccggatctgcgc
caatatcataccctgattttggatgaggcgcatgaacgcagcctcaacattgactttttg
ctcggctatctgcggcttttgctgggcaggcggagagacttgcggctggtcatcagttcc
gcgacgctggatgccggcgggttttccgaattctttggaggcgcgcctattattcaagta
gaaggccgcacttatccggtggacttccactatctgccgccgctgcatgacgatgaggaa
cttccggctcatgtggcgcgtgccgtggattggctggatactctggacgaccgcggggat
gtgcttgtcttccttcccggagaacgcgaaatacgtgaggtggcggaaaaactggaaggc
cggaatctgagaaacacgcgcattctgcctttgttcgccaggctgggcctggcgaaccag
caaaggatttttcatccggagcagggataccgccgcatcgtgctggctacaaatgtggcg
gaaacgtccctgacaatccccggcatcatttatgttattgactccggcctggcgcgcgtc
agccgctatagcccggcacgccaagtgcagcggcttcagatagaacccgtctccaaggcc
agcgcccgccagcgcgccggccgttgcggccgtgtgtgcgaaggtgtgtgcatccgcctg
tacagtgagaaggactgggaggacaggccggactttacggacccggaaatcaggcgcagc
gcactggccggggcgctgctccggatgaaagacctgggattgccggaaatgccggagttc
ccgcttccggatcctccttcatccaaactggtgacggaaggttaccgcaccttacgggag
atcggcgctctggacaaagcccggcagctcacgcccgtaggcagaaagctggcgcggttg
cccattgacccgcggctggcccgcatgctgctggaggcacaacatgaacaggccctgccg
gaaatgctggtgattgtagccggcctgggcatcatggatccccgtgaacgccctgcggat
gccgctcagaaagcggaccaggcccacgcgcagtggaaggaagaagatagtgacttcctg
tctctgctcaaattatggaaggctgcatggcaattccgggagggaaggcgctggcgtaaa
aaccagcttcggaaatggtgcgggaaaaatttcctcaatttcaaccgcatgatggaatgg
ttcaatttatgggaggacctttcccggctggtcagggaaacactgaaatgcagaatttcc
cctttggaagaagaaacggagcggcaggcttcctttgccatgattcaccggagcatcctg
gcgggcgttccgcgccagttcggcctctgggatgcagacaaccgggaatatcgcggcgcc
ggaggacgttccttcggcatttttcccggttccggcctgttccgccgtaaaaaaaggagt
gaatgggtaatgggcgtggagttggtggacaccacgcgcctgtggatgcgccgcgcctcc
attttggaaccgggatgggtggagctggtagcgccccatctgtgcgaatcacactattcc
ggagcgcggtgggacagggagcagggggctgtttacgcagtggaacgcgtcgtgtgcggc
ggcttgcgcattattgataacaggcgtgtgcactatggccgtatcaatcccgcccatgcg
cgggaaataatgatacgcgaaggcctgttgggcggtggtttccgcacgaaacccgcctgt
atcaggcatctggaaacactccgggaagaggttcggcagatagagctgaagttgcgccgt
ccggaccaggtctggtgtgaggaaggagtttttgaattctttaacaggcttgttcccccg
gactgctgtacggccagggcttttttgcggtgggccgccggtatggagaagaaaaacccg
gaagctctgcatgttccgccacaggaagccatgtacgaattctgggggaaagacctgctg
gatggttttccggatgaaatcacctgtaaaggagcggaatatgccgtgtattaccagaat
gatcccggcgcggaggatgacggcgtgaccctgggcgtccacatcgaccagttgccggat
attcccgaatggttgccggagtggggggttcccggtcatctggcccagcgggcggaatgc
ctgctgcgttcccttcccaaggatttgcgcgtctttctccagcctatcagccaaaaggcc
gcttactttgcggaactgaggcatggcctggaaccggacgggccgctggcggggaaactg
gcggaatttgtggaagtggaaacgggaaaattttgcgcgccctccttttttgacatgaac
cgtcttcctgcggagctggttacgaaaatatgggtgtgcgatgatgaaggggaagagctt
gccatgggcacggatgttgcggaactgaataaccgcttgggtaaaaaactttcccgtcgg
ttccaggaaacagcggaggatatcgtgtccgtaaccggcatgaaggaatggagctgcgga
gatttggaatacacggtggatgtggcgggaaggccgggttatgtggctctggtggatgaa
ggagcatccgtgggcgtccgtgtctttgaggatgaactggatgctgcggaatcccaccgg
gaggggtgcctgcgtttcatgcgcctgcgccagacggatcagcttaaccatctccgcaga
aaatttccgttgaagctggaaggaaagctctctcttcatatgctcggacgggagccgtct
accaatgcggaagacctggtggacgttgccgcggagatagccatgggccgtcctttgccg
cgcacggcggagcaattcgctgctgcggaaatgaatctgcgccaaaacctttttgacgcg
gcgcataacgtggcggatatatgggaactggtggcgggtacggaacatgccgtcagggac
tttacggcgctgcaaaagggtgtgcgccatacggagcgcattacggctgaccttcagcgc
cagcttgactggttgttacgcccccgtttcctgtgggcgcatggagcggaacgcttgccg
gacctgaaacggtacatgcagggaattgcggagcgtatcagacgcatcggccagcaaccc
cttgccagggaattggaacgcctggacctcttcgaacgcgtgtattttccctggcatcag
gttttgaaggaacatgccggagacctgcgctggatgcaatacggttatttgctggaagaa
taccgcctggccgttttcgctcccgccatctccgtcaagggccgcgtctccgaaaaacgt
ctggtggcttcttttgaggcattgtcaagccagtaa
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