| Entry |
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| Name |
(GenBank) DNA-directed RNA polymerase, beta' subunit
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| KO |
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| Organism |
amu Akkermansia muciniphila
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:amu00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amuc_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:amu03021]
Amuc_1040
03400 DNA repair and recombination proteins [BR:amu03400]
Amuc_1040
Enzymes [BR:amu01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amuc_1040
Transcription machinery [BR:amu03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amuc_1040
DNA repair and recombination proteins [BR:amu03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amuc_1040
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1238246..1242442)
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| AA seq |
1398 aa
MSDTPTIREMHGLSDKPRTFDQVAITVADPDTIRSWSFGEVVNPETINYRTFKPEKGGLF
CERIFGPTRDMECACGKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFY
KCMPSRIGLMLDMTARHLERVIYYEDYIVVDPGSTPLEKGAILTEEEFRNAEDEYGYDSF
EAGMGAEAIQKMLAAIDLPTLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEW
MILNVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEK
RMLQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIV
IGPELKLNQCGLPKKMALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVT
KGHPVMLNRAPTLHRLSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEA
QMEARQLMLAPNNIFSPASGKPIATPTQDIILGAYFLTHTRAAEVQNNQDNHHHLPLFES
IDEVEYAIAARKIGYHDWIRLHNPDYGKKPSEVVYGDVTKKVIITTAGRVRFNEIWPREL
GYINRNVGKKQMGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQ
KKTEIEKAYAELDKVTRQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLEHNEGSKM
ASPLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHG
ARKGLADTALKTADSGYMTRKLVDVAQDVIVHAEDCGTSNGITVHAIYDGDEEVASLSSR
IYGRTSCERIVDPVSGEVIVDINDLINEKQAEQLEKIGIERLKIRSVLTCELKKGCCAKC
YGLNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRV
IYTEDLRTVENADGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGTIKKDETL
ATWDPYNVPVIAEKGGIVEFKDMIVGITVSKETDRETGASSLVVMEHKQELHPQVVIRDA
KTREVLAHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLPRVAELFEARKP
KDACTIARVEGIVRLSSKNTSRGKKVITIETPTGELVDHLVPMNKHVIVHEDDHVHLGDQ
LTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIVRQMLRKVVITEP
GNTEFLWGDQVDKTTFDRINEQTVAQGGQPAAAKPVLLGITKASLETESFISAASFQDTT
RVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRYSKIEVEPAEGAEEIAAASEEEEA
AELAEDMLNDTINFDNER |
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| NT seq |
4197 nt +upstreamnt +downstreamnt
atgtctgacacccccaccatcagggaaatgcacggcctgagcgacaagccccggaccttt
gaccaggttgccatcaccgtggcggatccggataccatccgcagctggtcattcggtgaa
gtcgtcaacccggaaaccatcaactaccgcacgttcaagccggaaaaaggcggcctgttc
tgcgaacgcatcttcgggcccacccgagacatggaatgcgcctgcggcaagtacaagcgc
atcaagcataagggcatcacctgcgaccgctgcggcgtggaagtaaccaacgcgcgcgtg
cgccgcgaacgaatgggccatattgaactggccgttccggtttcccatatctggttttac
aaatgcatgcccagccgcattggccttatgctggacatgacagcccgccatttggaacgc
gtgatttactatgaagactacatcgtggtagatcccggcagtacccctctggaaaagggg
gccatcctgacggaagaagaattccgcaatgcggaagacgaatacggctatgacagcttt
gaagccggcatgggcgcggaagccatccagaaaatgctggcggccattgatctgcccacc
ctcgtcgcggatcttcaggaacagctggacaataccaactccaaacagaacaagcgcaag
attgccaagcgtctgaaactggcccaggggttccttcagtccaacacacgcccggaatgg
atgattttgaacgttctgcccgtcattcctccggacctgcgcccgctggttcctctggaa
ggcggccgtttcgcaacgtccgacctgaatgacctgtaccgccgcgtcatcaaccgcaac
aaccgcctgaaaaccctcctgagcctcaaaactccagaagtcatcatccgtaatgaaaaa
cgcatgcttcaggaagccgtggatgccctgtttgacaacggccgccacggccgtgccgtc
accggcgccggcaaccgccccctcaaatccctctccgacatgctgaagggcaagggaggc
cgtttccgccagaacctgctcggcaagcgcgtggactactccggccgctccgttatcgtc
atcggcccggaattgaaactcaaccagtgcggtcttcccaagaagatggcgctcattctg
tttgaacccttcatcatccaccgtctgaaagagctgggttacgtgcacacggtgcgctcc
gccaagaagctcattgaccgcaagacgccggaagtgtgggatattctggaagaagtgacc
aagggccacccggtcatgctcaaccgcgcgcccaccctgcaccgcctctccatccaggct
tttgaaccggttctgattgaaggttccgccatccgtctgcacccgctcgtctgtaatgcg
tacaacgcggacttcgacggcgaccagatggctgtgcacgtgcctctgtccgtggaagcg
cagatggaagcccggcagctcatgctggcgcccaacaatattttctcccctgcttccggc
aagcccattgccacacccacgcaggacatcattctgggcgcgtacttcctgacgcatacc
cgtgctgcggaagtacagaacaatcaggataatcatcaccatcttcccctcttcgaatcc
attgacgaggtggaatacgccattgccgcccgcaaaatcggctaccatgactggatccgc
ctgcacaacccggactacggcaaaaagccttccgaagtagtgtatggggatgtcaccaag
aaggttatcatcactactgccggacgcgtgcgtttcaatgaaatctggccccgggaactc
ggttacattaaccgcaacgtaggcaagaaacagatgggcgacatcatctggcgctgctac
cagaccgtcggcaaggaacgtaccgtgcagactctggacgccctgaaaaacctgggcttc
aaggaagcaacccgttccggctgctccatcggcatcgtggacatggtggttccctcccag
aaaaagacggaaattgaaaaagcctatgcggagctggacaaggtgacccgccagtataag
aacggtattatcacggatggggaacgctaccagaaggtggtggacatctggacccagact
acggatgtcatccaggcggctctgtaccgcaagctggaacacaacgaaggctccaagatg
gccagcccgctcttcatgatggtggactccggagcccgaggcaacaaggcgcagatcaag
cagctctccggcatgcgcggtttgatggcgaaacccagcggcgaaattatcgaacgcccc
atcacggccaacttccgtgaaggcctttccgtgctggaatacttcatctccacccacggc
gcccgcaagggtctggcagataccgcgctgaaaacggcggactccggctacatgacccgc
aaactcgtggacgtggcccaggatgtcatcgtccatgcggaagattgcggcaccagcaac
ggcatcaccgttcacgccatctatgacggcgacgaagaagtggcgtccctttcctcccgt
atctacggccggacttcctgcgaacgcatcgttgaccccgtcagcggcgaggttatcgta
gacatcaacgacctcattaacgaaaagcaggcggaacaactggaaaaaatcggcattgaa
cggctgaaaatccgctccgtactcacctgcgaactcaaaaagggctgctgtgccaagtgc
tacggcctgaacctggccaccggacaggaagtgaagatcggggaagcggtcggcattatt
gccgcccagtccatcggcgaacccggcacgcagctcaccatgcgtacgttccacgtgggc
ggaacggctaccacggcgttcaagcagcccatcgtgaaagccaagaacgacggccgcgtc
atctacacggaagatctccgcacggtggaaaacgcagacggcaacttcgtcgtcctgaat
aaaaactgctctgtccgcatcgaaaacgaacagggccgcgaactggaatcctaccagccc
gtcatcggcaccatcctgtacgtgcccaacggcggcactatcaagaaggatgaaaccctc
gccacctgggatccgtacaatgtgcccgtgattgcagaaaagggcggcatcgtcgaattc
aaggatatgatcgtcggcatcaccgtttccaaggaaacggaccgggaaaccggtgcctcc
tcccttgtcgtgatggaacacaagcaggaacttcacccgcaagtggtcatccgcgatgcc
aagacccgcgaagttctggctcatcatgccattcccgcaggcgccaacctcactgtgaag
gacggagaaaccatctccgccggcacaatggtggccaagacgccccgcaaggtagccaag
acgaaggacatcaccggcggtctgccccgcgtggcggaattgttcgaagcccgcaagccc
aaggacgcctgcaccattgcacgcgtggaaggcattgtgcgcctcagcagcaagaatact
tcccgcggcaagaaggtcattaccattgaaacacccacgggcgaactggtggaccatctg
gtcccgatgaacaagcacgtcatcgttcatgaagacgaccacgtgcatctgggcgaccag
cttacggaaggccccgtttctccggaagaaattctggatgtctgcggcaaggaacgtctc
caggaacacctcgttaacgaagttcaggaagtgtaccgcctccagggggtggaaatcaac
gacaagcatgtggaaatcatcgtgcgccagatgctccgcaaggtagtcatcacggaaccc
ggaaataccgaattcctgtggggagaccaagtggacaagaccacgttcgaccgcatcaat
gaacaaaccgtagcccagggcggccaaccggccgcagccaagcccgttctgctcggtatc
acgaaggcctccctggaaacggaatccttcatttccgcggcatctttccaggataccaca
cgcgttctgacggaagcatccaccctcggcaagaccgatactctggaaggcttcaaggaa
aacgtcatcatgggccacctcattcccgccggcaccggattctcccgttacagcaagatt
gaagtggaacctgcagagggcgcagaagaaatcgcggcggccagcgaagaagaggaagcg
gcggaacttgccgaagacatgttgaacgataccatcaacttcgacaacgaacgctaa |
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