Akkermansia muciniphila: Amuc_1040
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Entry
Amuc_1040 CDS
T00736
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amu
Akkermansia muciniphila
Pathway
amu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amuc_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amu03021
]
Amuc_1040
03400 DNA repair and recombination proteins [BR:
amu03400
]
Amuc_1040
Enzymes [BR:
amu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amuc_1040
Transcription machinery [BR:
amu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amuc_1040
DNA repair and recombination proteins [BR:
amu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amuc_1040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ACD04866
UniProt:
B2UQY1
LinkDB
All DBs
Position
complement(1238246..1242442)
Genome browser
AA seq
1398 aa
AA seq
DB search
MSDTPTIREMHGLSDKPRTFDQVAITVADPDTIRSWSFGEVVNPETINYRTFKPEKGGLF
CERIFGPTRDMECACGKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFY
KCMPSRIGLMLDMTARHLERVIYYEDYIVVDPGSTPLEKGAILTEEEFRNAEDEYGYDSF
EAGMGAEAIQKMLAAIDLPTLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEW
MILNVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEK
RMLQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIV
IGPELKLNQCGLPKKMALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVT
KGHPVMLNRAPTLHRLSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEA
QMEARQLMLAPNNIFSPASGKPIATPTQDIILGAYFLTHTRAAEVQNNQDNHHHLPLFES
IDEVEYAIAARKIGYHDWIRLHNPDYGKKPSEVVYGDVTKKVIITTAGRVRFNEIWPREL
GYINRNVGKKQMGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQ
KKTEIEKAYAELDKVTRQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLEHNEGSKM
ASPLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHG
ARKGLADTALKTADSGYMTRKLVDVAQDVIVHAEDCGTSNGITVHAIYDGDEEVASLSSR
IYGRTSCERIVDPVSGEVIVDINDLINEKQAEQLEKIGIERLKIRSVLTCELKKGCCAKC
YGLNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRV
IYTEDLRTVENADGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGTIKKDETL
ATWDPYNVPVIAEKGGIVEFKDMIVGITVSKETDRETGASSLVVMEHKQELHPQVVIRDA
KTREVLAHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLPRVAELFEARKP
KDACTIARVEGIVRLSSKNTSRGKKVITIETPTGELVDHLVPMNKHVIVHEDDHVHLGDQ
LTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIVRQMLRKVVITEP
GNTEFLWGDQVDKTTFDRINEQTVAQGGQPAAAKPVLLGITKASLETESFISAASFQDTT
RVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRYSKIEVEPAEGAEEIAAASEEEEA
AELAEDMLNDTINFDNER
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacacccccaccatcagggaaatgcacggcctgagcgacaagccccggaccttt
gaccaggttgccatcaccgtggcggatccggataccatccgcagctggtcattcggtgaa
gtcgtcaacccggaaaccatcaactaccgcacgttcaagccggaaaaaggcggcctgttc
tgcgaacgcatcttcgggcccacccgagacatggaatgcgcctgcggcaagtacaagcgc
atcaagcataagggcatcacctgcgaccgctgcggcgtggaagtaaccaacgcgcgcgtg
cgccgcgaacgaatgggccatattgaactggccgttccggtttcccatatctggttttac
aaatgcatgcccagccgcattggccttatgctggacatgacagcccgccatttggaacgc
gtgatttactatgaagactacatcgtggtagatcccggcagtacccctctggaaaagggg
gccatcctgacggaagaagaattccgcaatgcggaagacgaatacggctatgacagcttt
gaagccggcatgggcgcggaagccatccagaaaatgctggcggccattgatctgcccacc
ctcgtcgcggatcttcaggaacagctggacaataccaactccaaacagaacaagcgcaag
attgccaagcgtctgaaactggcccaggggttccttcagtccaacacacgcccggaatgg
atgattttgaacgttctgcccgtcattcctccggacctgcgcccgctggttcctctggaa
ggcggccgtttcgcaacgtccgacctgaatgacctgtaccgccgcgtcatcaaccgcaac
aaccgcctgaaaaccctcctgagcctcaaaactccagaagtcatcatccgtaatgaaaaa
cgcatgcttcaggaagccgtggatgccctgtttgacaacggccgccacggccgtgccgtc
accggcgccggcaaccgccccctcaaatccctctccgacatgctgaagggcaagggaggc
cgtttccgccagaacctgctcggcaagcgcgtggactactccggccgctccgttatcgtc
atcggcccggaattgaaactcaaccagtgcggtcttcccaagaagatggcgctcattctg
tttgaacccttcatcatccaccgtctgaaagagctgggttacgtgcacacggtgcgctcc
gccaagaagctcattgaccgcaagacgccggaagtgtgggatattctggaagaagtgacc
aagggccacccggtcatgctcaaccgcgcgcccaccctgcaccgcctctccatccaggct
tttgaaccggttctgattgaaggttccgccatccgtctgcacccgctcgtctgtaatgcg
tacaacgcggacttcgacggcgaccagatggctgtgcacgtgcctctgtccgtggaagcg
cagatggaagcccggcagctcatgctggcgcccaacaatattttctcccctgcttccggc
aagcccattgccacacccacgcaggacatcattctgggcgcgtacttcctgacgcatacc
cgtgctgcggaagtacagaacaatcaggataatcatcaccatcttcccctcttcgaatcc
attgacgaggtggaatacgccattgccgcccgcaaaatcggctaccatgactggatccgc
ctgcacaacccggactacggcaaaaagccttccgaagtagtgtatggggatgtcaccaag
aaggttatcatcactactgccggacgcgtgcgtttcaatgaaatctggccccgggaactc
ggttacattaaccgcaacgtaggcaagaaacagatgggcgacatcatctggcgctgctac
cagaccgtcggcaaggaacgtaccgtgcagactctggacgccctgaaaaacctgggcttc
aaggaagcaacccgttccggctgctccatcggcatcgtggacatggtggttccctcccag
aaaaagacggaaattgaaaaagcctatgcggagctggacaaggtgacccgccagtataag
aacggtattatcacggatggggaacgctaccagaaggtggtggacatctggacccagact
acggatgtcatccaggcggctctgtaccgcaagctggaacacaacgaaggctccaagatg
gccagcccgctcttcatgatggtggactccggagcccgaggcaacaaggcgcagatcaag
cagctctccggcatgcgcggtttgatggcgaaacccagcggcgaaattatcgaacgcccc
atcacggccaacttccgtgaaggcctttccgtgctggaatacttcatctccacccacggc
gcccgcaagggtctggcagataccgcgctgaaaacggcggactccggctacatgacccgc
aaactcgtggacgtggcccaggatgtcatcgtccatgcggaagattgcggcaccagcaac
ggcatcaccgttcacgccatctatgacggcgacgaagaagtggcgtccctttcctcccgt
atctacggccggacttcctgcgaacgcatcgttgaccccgtcagcggcgaggttatcgta
gacatcaacgacctcattaacgaaaagcaggcggaacaactggaaaaaatcggcattgaa
cggctgaaaatccgctccgtactcacctgcgaactcaaaaagggctgctgtgccaagtgc
tacggcctgaacctggccaccggacaggaagtgaagatcggggaagcggtcggcattatt
gccgcccagtccatcggcgaacccggcacgcagctcaccatgcgtacgttccacgtgggc
ggaacggctaccacggcgttcaagcagcccatcgtgaaagccaagaacgacggccgcgtc
atctacacggaagatctccgcacggtggaaaacgcagacggcaacttcgtcgtcctgaat
aaaaactgctctgtccgcatcgaaaacgaacagggccgcgaactggaatcctaccagccc
gtcatcggcaccatcctgtacgtgcccaacggcggcactatcaagaaggatgaaaccctc
gccacctgggatccgtacaatgtgcccgtgattgcagaaaagggcggcatcgtcgaattc
aaggatatgatcgtcggcatcaccgtttccaaggaaacggaccgggaaaccggtgcctcc
tcccttgtcgtgatggaacacaagcaggaacttcacccgcaagtggtcatccgcgatgcc
aagacccgcgaagttctggctcatcatgccattcccgcaggcgccaacctcactgtgaag
gacggagaaaccatctccgccggcacaatggtggccaagacgccccgcaaggtagccaag
acgaaggacatcaccggcggtctgccccgcgtggcggaattgttcgaagcccgcaagccc
aaggacgcctgcaccattgcacgcgtggaaggcattgtgcgcctcagcagcaagaatact
tcccgcggcaagaaggtcattaccattgaaacacccacgggcgaactggtggaccatctg
gtcccgatgaacaagcacgtcatcgttcatgaagacgaccacgtgcatctgggcgaccag
cttacggaaggccccgtttctccggaagaaattctggatgtctgcggcaaggaacgtctc
caggaacacctcgttaacgaagttcaggaagtgtaccgcctccagggggtggaaatcaac
gacaagcatgtggaaatcatcgtgcgccagatgctccgcaaggtagtcatcacggaaccc
ggaaataccgaattcctgtggggagaccaagtggacaagaccacgttcgaccgcatcaat
gaacaaaccgtagcccagggcggccaaccggccgcagccaagcccgttctgctcggtatc
acgaaggcctccctggaaacggaatccttcatttccgcggcatctttccaggataccaca
cgcgttctgacggaagcatccaccctcggcaagaccgatactctggaaggcttcaaggaa
aacgtcatcatgggccacctcattcccgccggcaccggattctcccgttacagcaagatt
gaagtggaacctgcagagggcgcagaagaaatcgcggcggccagcgaagaagaggaagcg
gcggaacttgccgaagacatgttgaacgataccatcaacttcgacaacgaacgctaa
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