Acropora muricata (staghorn coral): 136889732
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Entry
136889732 CDS
T11512
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
amua Acropora muricata (staghorn coral)
Pathway
amua03018
RNA degradation
amua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136889732
09123 Folding, sorting and degradation
03018 RNA degradation
136889732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amua03019
]
136889732
03041 Spliceosome [BR:
amua03041
]
136889732
Messenger RNA biogenesis [BR:
amua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136889732
mRNA degradation factors
5'-3' decay
Lsm complex
136889732
Spliceosome [BR:
amua03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
136889732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
136889732
NCBI-ProteinID:
XP_067018213
LinkDB
All DBs
Position
11:complement(join(473257..473272,474219..474235,474780..474852,475214..475241,476143..476238,477841..477913))
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AA seq
100 aa
AA seq
DB search
MYVIYDYLEFRMAAVRNESQLLPLELIDKCIGSRIHIVMKSDKEIVGVLLGFDDYVNIVL
EDVTVFENTPEGRRMTKLDQILLNGNNITMLIPGGEGPET
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgatatatgactacttggaattcagaatggcggctgttcgaaatgaatctcag
cttctcccacttgaattaattgacaagtgcattggatctagaattcacattgttatgaaa
agtgataaagaaattgttggtgtacttttgggttttgatgactatgtcaacatagttttg
gaggatgttacagtatttgagaatacaccagagggtcgcagaatgactaaacttgaccag
atccttttaaatggcaacaatataacaatgctgattcctgggggagagggtccagagacc
tga
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