Acropora muricata (staghorn coral): 136930807
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Entry
136930807 CDS
T11512
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
amua Acropora muricata (staghorn coral)
Pathway
amua03013
Nucleocytoplasmic transport
amua03015
mRNA surveillance pathway
amua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136930807
09122 Translation
03013 Nucleocytoplasmic transport
136930807
03015 mRNA surveillance pathway
136930807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amua03019
]
136930807
03041 Spliceosome [BR:
amua03041
]
136930807
Enzymes [BR:
amua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136930807
Messenger RNA biogenesis [BR:
amua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136930807
Spliceosome [BR:
amua03041
]
Complex C
Other components
EJC/TREX
136930807
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136930807
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
136930807
NCBI-ProteinID:
XP_067056149
LinkDB
All DBs
Position
10:37512198..37587226
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AA seq
429 aa
AA seq
DB search
MAEDGDAETELLDYEEEETETTVETQAVKDHAKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEQIDGQVSVLVM
CHTRELAFQISKEYERFSKYMNNIKVSVFFGGISIKKDQQTLKTNCPHIVVGTPGRILAL
AREKSLNLKHIKHFILDECDKMLEQLDMRRDVQEVFRMTPHEKQVMMFSATLAKEIRPVC
KKFMQDPMEVYVDDETKLTLHGLQQYYCKLKDQEKNRKLFDLLDVLEFNQVIIFVKSVQR
CQALAQLLVEQNFPAIHIHRGMQQEERLSNYKQFKDFSKRMLVATNLFGRGMDIERVNIV
FNYDMPDDSDTYLHRVARAGRFGTKGLAITFVCDEKDAKVLNEVQDRFEVNVGELPEEID
LTSYIEAVR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagatggtgatgcagaaaccgaattgttggattacgaagaggaggagacagag
accactgtggaaactcaggcagtcaaagatcatgcgaagaaagacgtgaaaggcacctat
gtcagtattcacagctctggttttagagattttcttttgaagccggaacttctgcgcgcc
attgttgattgtggtttcgaacatccatctgaagtccaacacgagtgcattccccaggca
atcctaggcatggacatcatctgccaagcgaaaagtggcatgggcaagacggcggtattt
gtcctggccactcttcaacagttagagcaaattgatggtcaagtgagtgtgttggtcatg
tgccacacacgagaattggccttccagatctcgaaagagtatgaaaggttttctaaatac
atgaataacatcaaagtttcagtgtttttcggtggcataagcatcaaaaaggaccagcag
accctgaagaccaactgccctcacattgttgtgggtacaccaggcagaattttggcactg
gcacgtgaaaagtcgcttaatctcaagcatatcaagcattttattctcgatgagtgtgac
aaaatgctggaacagcttgatatgcgaagagatgtccaagaagtattccgcatgactcct
catgaaaagcaggtcatgatgttcagtgcaacgctggcaaaagaaatccgacctgtttgc
aagaagtttatgcaagatccaatggaggtatatgttgatgatgagacaaagcttacatta
catggccttcagcagtattattgcaaactgaaagaccaggagaagaatagaaagcttttt
gaccttttagatgtgttagagttcaatcaggtcatcatctttgtcaagtcagtgcagcgc
tgtcaagctcttgcacagcttctggttgaacagaacttccctgctattcatatccacagg
ggaatgcaacaggaagaaaggttatcaaattacaagcagtttaaagatttctccaagaga
atgcttgtagcaaccaacctgtttggacgtgggatggacattgagagagtaaacatcgtc
tttaactacgacatgcctgacgactctgacacctatcttcatagggttgcgagagctggt
cgttttggaactaaaggtcttgcaatcacatttgtctgtgatgaaaaagatgccaaagtt
ttgaatgaggtccaagatcgctttgaagtcaatgttggtgaactccccgaagaaatcgat
ctcacatcatacattgaagcagtgcgctga
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