KEGG   Acropora muricata (staghorn coral): 136931200
Entry
136931200         CDS       T11512                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
amua  Acropora muricata (staghorn coral)
Pathway
amua03013  Nucleocytoplasmic transport
amua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136931200
  09122 Translation
   03013 Nucleocytoplasmic transport
    136931200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amua03019]
    136931200
   03041 Spliceosome [BR:amua03041]
    136931200
Messenger RNA biogenesis [BR:amua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     136931200
Spliceosome [BR:amua03041]
 Complex C
  Other components
   EJC/TREX
    136931200
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    136931200
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st EIF3I Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_Vps41 eIF2A Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd DSE1_N WD40_RFWD3 RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_TEP1_C PD40 Beta-prop_EIPR1 TRM82_WD CFAP251_N Beta-prop_WDR75_1st PAC11 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_ACSF4 Beta-prop_DCAF12 Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_ELP1_1st DPPIV_N JLPA
Other DBs
NCBI-GeneID: 136931200
NCBI-ProteinID: XP_067056745
LinkDB
Position
10:complement(27536241..27545288)
AA seq 321 aa
MAPGDYLNEMKRYFENNSRTKDFIAHTAKVHSVAWSCDGRRLASGSFDRTVSIFVLEKDR
LTKETNHKGHGESVDQLCWHPSSSNFLVTASGDKTIRIWDARASKCVSVVNTKGENINIC
WSPDGNTIAVGNKEDLITFIDARTYKARCDEQFKYEVNEISWNNTNDLFFLTNGHGCINI
LSYPDLKLQQTLHAHPANCICIKFDPKGRYFATGSADALVSLWDLDELVCVRTFSRLDWP
VRTLSFSHDGEMLASGSEDLIIDIAMVETGERICEVQCNAPTFTVAWHPSKPLLAFACDD
KDKHDRDAGTVRLFGFGTNSS
NT seq 966 nt   +upstreamnt  +downstreamnt
atggcgccgggagactatctgaacgagatgaaacggtattttgaaaacaactcaagaacg
aaagactttatcgcccacacagccaaggttcattctgtagcttggagttgtgacggcaga
agactcgcttcaggctcatttgacagaactgttagcatttttgtgttggagaaggaccgt
ttaactaaagaaacaaatcacaaaggccatggagagagtgttgatcaactttgctggcat
ccaagtagctctaattttctagtgacagcatctggtgataaaacaatcagaatatgggat
gccagagccagcaagtgtgtatctgttgtaaatactaaaggagaaaacataaatatttgt
tggagccctgatggtaatacaatagcagttgggaacaaggaagatctaataacatttata
gatgcaagaacctataaagcaagatgtgatgaacaattcaaatacgaagtgaatgaaatc
tcttggaataacacaaatgacttattttttctaaccaatggacatgggtgtattaacata
ttaagttatcctgatttaaagctccaacaaacattacacgctcatcctgccaactgcatt
tgtataaagtttgatcccaaaggaaggtattttgcaactgggagtgctgatgcattggtt
agtctatgggacttagatgagctggtttgtgtcagaacattttcaagacttgactggcca
gtacgaacactaagctttagtcatgatggtgagatgctagcatccggctctgaggatctt
atcattgatattgccatggtagaaactggcgagagaatatgtgaggtacagtgcaatgca
ccaacgttcacagtagcttggcatccttcaaagcctctgttagctttcgcttgtgatgat
aaggataaacatgatcgagatgccggcacagttcgtctctttggcttcgggaccaactcc
tcctga

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