Acropora muricata (staghorn coral): 136931469
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Entry
136931469 CDS
T11512
Name
(RefSeq) superkiller complex protein 2-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
amua Acropora muricata (staghorn coral)
Pathway
amua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136931469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amua03019
]
136931469
Enzymes [BR:
amua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136931469
Messenger RNA biogenesis [BR:
amua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136931469
mRNA degradation factors
3'-5' decay
Ski complex
136931469
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DUF3516
Motif
Other DBs
NCBI-GeneID:
136931469
NCBI-ProteinID:
XP_067057184
LinkDB
All DBs
Position
10:30850537..30874809
Genome browser
AA seq
1305 aa
AA seq
DB search
MADEREAQEECDPLEYDFDLLEVGCTGIIEVIPPSINKTSKKELSPLTTLPSGLPPLFPP
DLKTDLEKYLLDPTSLPIHDFHKTQRFWPRERDSESLFYADVCPVPTTLKVERNPTTGEL
LGYNEVILKDTGSTAKNSMSILRQPGPLSASVRGDSTNYPFLPGGMDTQETTKPALVFDG
ALNFENNLFSQPPGFTKVVSFNDSKAEEEVKREKEDNEEKEEKGKDSSTSPPQVLAMADI
MAGTTLEDLEYSDEESEVDSDEDYVNQTSEKEEYNVDQTDPAEGNTEDSLENVLVKEQGS
VVNKFTSAATGAEKPVKEQWAVMINVTEPVKDFHKRVPDMAYKWPFELDTFQKQAVLCLE
NNECVFVAAHTSAGKTVVAEYAVALAIKHMTKTVYTSPIKALSNQKFREFKDTFEDVGLL
TGDVQIRPEASCLIMTTEILRSMLYNGSDTIRDVEWVIFDEVHYINDEERGVVWEEVLIM
LPAQVKIILLSATVPNTLEFADWIGRTKKKKIYVISTPKRPVPLQHFLYTGNSNKTSSEL
FMIVDANSKFLTRGYDAAVEAKKVREGKGKAAYGSKTHQPVNVREERNIWLSLIEMLRKE
EKLPVVAFTFSRKRCDENADQLSSLDLTTSTEKSSIHVFTQKCVSRLKGSDRKLPQVSRI
RELLKRGLGVHHSGVLPIIKEMVEMLFGRGLVKILFATETFAMGVNMPARTVVFDSIRKH
DGTAFRDLLSGEYIQMAGRAGRRGLDPTGTVILLCKANVPLMADLHKMMLGRPTQLVSRF
RLTYSMILNLLRVEELRVEDMMKRSFAEFHMQKDAQERKREMEELEQKLQNVKELDCTFC
SEDLKLYFKGCRELSELTRIVQAAILSSAQGQRALSPGRVVTINTSEHRNALAVILQAEN
PPNQGYPTMHSRPVSSPKEKHFLVLVICDAQEQRPGSSDEDSVSKPGVPSAGMADEVQPF
LKTKLFLPERRCSHSVTRVNGTEISAISVRQLKLDTSKIIDDHKKRMLPRFRNDPPGRTT
VTAEQELLRLSEANPEGLNKMDPVKDFNIRDIDMVTTVARKQSLEESITSFKCLDCPKFT
GHFEAIAHQMRLRDHVTSLRYLLSDESLQHTEELRQRIQVLQKLRYVDANNAVKLKGRVA
CEINNHELIITELVFENAFTDLHPTEIVALLSCFVFQQRRCSEPKLTKTLEEGKKRILTM
AEEIAWLQSECGLVTSVEEFKEQYNFGLVEAVFEWARGMPFSEITNLTDVQEGIIVRCIQ
RLDETCRDVRNAARVIGDPKLGEKMEEASAMIKRDIVFAASLYTQ
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgagagagaagctcaagaggaatgtgatccgctggaatatgatttcgatctt
ctagaagttggatgcactggaattattgaggttattccaccatcaatcaacaaaacttcg
aagaaagaactgagccctttaacaacactaccttcaggactcccacctttatttcctcct
gatttgaaaacagacttggagaaatatctcctggatcccacatctttgcctattcatgac
tttcataagacgcaaaggttttggcctcgggaaagagattcagagagtctgttctatgca
gatgtctgtccagtgccaacaacgttaaaagtggagagaaatccaacaactggagagctt
cttggttataatgaggtcattttgaaagatactggttccacagccaagaattctatgtcc
atcttgcgacagccagggccactgtcggcttcagtcaggggagattctaccaattacccc
tttttgccaggtggaatggacactcaagaaacaacaaaaccagcccttgtatttgatgga
gcattaaactttgagaacaatcttttctctcaaccaccaggttttaccaaagtggtctca
tttaatgactcaaaagcagaggaggaagttaaaagggaaaaagaagacaatgaagaaaaa
gaagaaaaagggaaagattcaagtacatcaccacctcaagttcttgctatggccgatatc
atggctggaacaacacttgaagatctcgagtacagtgacgaagaaagtgaagtagactcg
gatgaagattacgtaaaccagacctctgaaaaagaagaatataatgttgatcagacagat
cctgcagagggaaatacagaagacagtcttgaaaatgttttagtgaaggaacagggctca
gttgtcaataaattcacgtcagcggcaactggtgcagaaaaaccagtgaaagagcaatgg
gctgtcatgattaatgtaacagaaccagtgaaggattttcacaaacgagttcctgatatg
gcttacaagtggcctttcgagttggacacctttcaaaaacaggctgtcctctgtttggaa
aacaacgagtgtgtgtttgttgctgcgcatacgtctgctgggaagacagtggtggctgag
tatgctgttgccttggctatcaaacatatgacgaagacagtgtatacctcgcccatcaaa
gcgttatccaaccaaaagtttcgcgaattcaaggacacttttgaggatgtgggtttgcta
actggtgatgtccaaatcagacctgaagcgtcttgtcttatcatgacgactgaaatcctg
cgttccatgttgtacaatggctctgacacaatcagagatgtggagtgggtgatttttgat
gaagtacactacatcaacgatgaagagaggggtgtcgtctgggaagaggtgctgatcatg
ttaccggctcaggtcaaaattatattactgtcggctacagtgccaaacactctggagttt
gcagactggattggtcgcaccaagaaaaaaaagatctacgtcatcagcacgcctaagcga
ccagttcctctccagcacttcctgtacacgggcaacagcaacaaaacaagtagcgaactg
tttatgatcgtagacgccaacagcaagttcctgacgcgcggttacgatgctgcagtagag
gcgaaaaaagtgcgggaaggaaagggaaaggccgcgtatggttccaagactcatcaacca
gtcaacgtgagggaggagcgcaacatttggctttccttgattgagatgctgcgtaaggaa
gaaaagctacctgtggtggcttttaccttctcaaggaagagatgcgacgaaaatgcggat
caactaagcagccttgatctcaccacttccacggagaagagctcaattcacgtgttcact
cagaagtgtgtgtcaagactcaaaggaagtgatagaaagctaccgcaagtttccaggata
agggagctccttaaacgcggcctcggtgtccatcatagtggagtattgcccataataaaa
gagatggtggaaatgttgtttggacgaggattggtaaagattctgtttgctacagagacg
tttgctatgggagtcaacatgcccgccagaacagtggtgtttgattcaataaggaaacat
gatggaactgcctttcgagatcttttatccggagagtacatccaaatggctggccgcgcg
ggacgaaggggactggacccgaccggaactgtgattctactttgcaaagcaaatgtccct
ctgatggctgatctacacaaaatgatgctgggcagaccaacacaattggtttccagattt
cgtctcacttactccatgatcctgaatcttttgcgagttgaggagttgcgcgtggaagac
atgatgaaaagaagttttgccgagtttcacatgcaaaaggatgcacaagagagaaaacgc
gaaatggaagaattagaacaaaagctgcaaaatgtcaaggaactggactgtacgttttgc
tcggaggatttgaaattatacttcaaaggttgcagagagctgtcggaattaacacgaatt
gttcaggctgcgattctctcatctgctcagggtcagcgggctctctctccagggcgtgtt
gtcaccataaatacttctgaacacagaaacgcgctcgctgtcatattgcaagcggaaaat
cccccgaaccagggttacccaaccatgcattctcggccagtttccagtcccaaagaaaag
cacttcctcgtcctcgtcatatgtgacgcacaagagcaaagacctggttcaagtgacgaa
gattcagtttccaagccaggcgtgccttcagccggcatggccgatgaagtacaaccgttt
ctaaaaacgaagttatttttacctgaaagacgatgttctcatagtgtcacaagagtgaat
ggaactgaaatcagcgctatttctgttcgccaactgaagctggacacaagcaaaatcatc
gatgatcacaagaaaagaatgctgccaagattcagaaacgatccaccgggaagaacgaca
gtaacagctgaacaagaactgctgcgattgtccgaggcaaatccagagggactgaacaaa
atggatccggtcaaagatttcaacatccgagatatcgacatggtgacaacagtcgcacga
aagcaaagccttgaagagagtataaccagcttcaaatgtttagactgtcctaagtttacg
ggacattttgaagctatcgcgcaccagatgaggctccgtgaccacgtgacttcgctcaga
tatttgttgtcggatgaaagtctgcaacacacagaggagcttcggcagagaattcaggtg
ctacagaaattgcgttatgtggatgctaacaatgctgtgaagcttaaaggaagagtagca
tgtgagataaacaaccacgaactcattattacagagcttgtgtttgaaaatgctttcacc
gatctacatcccacagaaattgttgctttgttgtcctgtttcgtcttccagcagcgtcgt
tgcagcgaaccaaagctaacaaagacgctagaggagggcaagaaacgtatcttaaccatg
gctgaggagatcgcctggcttcagtcagaatgcggtcttgtcacatccgttgaagagttt
aaagagcaatacaattttggtttggttgaagcagtgtttgagtgggcgcgtggtatgcct
ttctccgaaatcaccaatctaacagatgtccaggaaggaattatcgttcgatgtattcag
cgattggacgagacgtgtcgtgacgtcaggaatgctgctcgtgttattggagatccaaaa
cttggcgagaagatggaagaagcttctgccatgattaaaagagatatagtattcgctgcg
agtctgtacacacagtaa
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