Aeoliella mucimassa: Pan181_04190
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Entry
Pan181_04190 CDS
T06952
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amuc
Aeoliella mucimassa
Pathway
amuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan181_04190 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amuc03019
]
Pan181_04190 (rne)
03009 Ribosome biogenesis [BR:
amuc03009
]
Pan181_04190 (rne)
Enzymes [BR:
amuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pan181_04190 (rne)
Messenger RNA biogenesis [BR:
amuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan181_04190 (rne)
Ribosome biogenesis [BR:
amuc03009
]
Prokaryotic type
rRNA processing factors
Pan181_04190 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
QDU54239
UniProt:
A0A518AHM9
LinkDB
All DBs
Position
complement(504172..506460)
Genome browser
AA seq
762 aa
AA seq
DB search
MDKSNTPNDELQPDDPGGLRAVAETQVSTDEAPEDQTLEQANLEPDDAADQLPSDEAPQD
EPVAAEVEPEEEAETDETETSEEEAATETPSEQDEADAASTDEVEDEEDSIADDDTEVIE
AETSAAETDSDTEAKLETTDEAEESDAKADDDKSAEDNAEAATAEEGSGEAPTEGEGEGR
PKRRRRRGARRKKKKVAKKAAEVSDDEESGRPTVKQEMLINVAQPEECRIGILEDGILEE
LYVERSSQDNYVGNIYKGKIVNLEPSIQAAFVDFGVGRNGFLHISDVEPQYFRQGGFDPD
KPIQSDGTQQGDQTDYDGDDDIDDDDVDESGPRRQRGNRRHRPGVRPRIKPPIQEIFQRG
DEVVVQVIKEGIGTKGPTLSTYISIPGRYVVLMPALGRIGVSRKIESEEDRRRLRDILRE
LNPPKGLGFIVRTAGTDRTKKEISRDLAYLLRLWKTIVRRIKSAEAPTDIYEESDMIIRT
IRDIFTADVDAIHIDEPSAYERAKEFLQIVMPRYVNRLHLYEGREPLFHKYKIDEEISQI
NQRKVPLKGGGSLVIDQTEALVAIDVNSGSFRTDGTAEESAFQLNRIAAKEIARQLRLRD
LGGVIVNDFIDMRRDRHRRIIERTLRDAVKRDRARTKILRISPFGLIEMTRQRVRPSLKR
SVFKECPSCSGAGLVKSAESMSIEVVRKLIMAAQIDRVAKITVTVEEEVATYLNNRKRRE
LTRLEDDSSLTITVIGREGIAPEHLDISCEDETGRLLAIDRI
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatccaacacccctaacgacgaactccagccagacgatccgggtggacttcgt
gcggtagccgaaactcaggtttcgaccgacgaagcgcccgaagatcaaacgctcgagcaa
gcgaatctggaaccagacgacgcagcagaccaacttcccagcgacgaagcaccgcaggac
gaaccggtagccgccgaagtagaacctgaggaagaggccgaaaccgacgagacagaaacc
tcggaggaagaagcggccactgaaaccccctcggaacaagacgaagccgacgcagcctcc
accgacgaagtggaggacgaggaagactcgattgctgacgacgacaccgaagtgatcgaa
gcggagacttccgcagcggaaaccgatagcgacaccgaagccaagttggagacgaccgac
gaagcggaggagtcggacgcgaaagccgatgacgacaaatcggccgaagacaacgcggaa
gcagccaccgccgaagaaggctcgggcgaagcgccgaccgaaggcgaaggcgagggtcgc
cccaagcgtcgccgccgtcgaggagcgcgtcgcaagaagaagaaggtcgccaagaaggcg
gcggaagtcagcgacgacgaagagtcgggccgccccaccgtgaagcaagagatgctgatc
aacgtggcccagcccgaagagtgccgcatcggcattctcgaggatggcatcctcgaagag
ttgtacgtggagcgtagcagccaggacaactacgtcggcaacatctacaagggcaagatc
gttaacctcgagcccagcatccaagccgcgtttgtcgacttcggtgtcggccgcaacggg
ttcttgcacatcagcgacgtggaacctcagtacttccgccaaggtgggttcgaccccgac
aagccaattcaatccgacggcacccaacaaggtgaccagaccgactacgatggcgacgac
gacatcgacgacgatgatgtcgacgaatcgggaccacgccgtcagcggggcaaccgtcgc
caccgccctggtgtgcgtccgcggatcaagccaccgattcaagagatcttccaacgcggc
gacgaggtcgtggtgcaggtcatcaaggaaggcatcggtaccaaaggcccgaccctttcg
acctacatcagcatccccggtcgttacgtggtgctgatgcccgccctcgggcggatcggc
gtgtcgcggaagatcgagagcgaagaagatcgccgccggttgcgcgacatcctgcgtgag
ctgaatcctcccaagggtctcggcttcatcgtccgcaccgctggtaccgaccgtaccaag
aaagagatctcccgcgacctggcgtacctgctacggctgtggaagaccatcgtccggcgg
atcaagagcgccgaagcgccgaccgacatctacgaagaaagcgatatgatcattcgcacg
atccgcgatatctttaccgcggacgtggatgcgattcacatcgacgagccttcggcctac
gagcgggcgaaggagttcctgcagatcgtgatgccgcggtacgtgaatcggttgcatttg
tacgagggtcgcgaaccactgttccacaagtacaagatcgacgaagagatctcgcagatc
aatcaacgcaaggtgccgcttaagggtggtggctcgctggtgatcgatcaaaccgaagcc
ctcgtggcgatcgatgtgaacagcggcagcttccgcaccgatggcaccgccgaagagtcg
gccttccagctcaatcgcatcgccgcgaaagagatcgcccggcagcttcgcctccgcgac
ctgggcggagtgatcgtcaacgacttcatcgacatgcgtcgcgatcgtcatcgtcggatc
atcgagcgaacgcttcgcgacgcggtgaaacgcgaccgcgcccgcaccaagatcctccgc
atcagccccttcggcctgatcgaaatgacccgccaacgggtgcggccgagcttgaaacgg
agcgtgttcaaggaatgcccgagctgcagcggcgccggcctggtcaagagcgccgagagc
atgtcgatcgaagtggtccgcaagctgataatggccgctcagatcgaccgcgtcgccaag
atcaccgtcacggtggaagaggaagtggccacctacttgaacaatcgcaagcgccgcgag
ctgacccgcctggaagacgacagttcgctaacgatcaccgtgatcggccgcgaaggcatc
gcgcccgagcatttggatatctcttgcgaagacgaaactggacgactgctggcgatcgac
cggatctag
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