Aeoliella mucimassa: Pan181_24420
Help
Entry
Pan181_24420 CDS
T06952
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amuc
Aeoliella mucimassa
Brite
KEGG Orthology (KO) [BR:
amuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amuc03016
]
Pan181_24420 (rtcB_1)
Enzymes [BR:
amuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan181_24420 (rtcB_1)
Transfer RNA biogenesis [BR:
amuc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan181_24420 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
Pan181_24420 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDU56234
UniProt:
A0A518AND4
LinkDB
All DBs
Position
complement(2918660..2920072)
Genome browser
AA seq
470 aa
AA seq
DB search
MNRKQLQKLGVPPRCVKIATQTLSRAAQQGTGFGLKGKQAKQLVAAVLDSPQAYLHDSVW
GEFARELLTKDIEPQAEPITYRTWGDEIDHSAHAQMRQACRVPSAVGAALMPDAHVGYGL
PIGGVLACENAVIPYAVGVDIACRMKLSVLDLPADSLAKRRNLLEEALLGGTRFGVGIEH
KPRQQHEVLDRDWKVTYITHQKKDTAWKQLGTSGSGNHFVEFGLLSLAERDDELNLDPGE
YLALLSHSGSRGAGAAVCNYYSQMAQRMMPPGCKELGHLGWLSLDTEAGQEYWAAMNLMG
EYAAANHAVIHRLVAKLAGAQVIAGVENHHNFAWKEYHEVPGKGRREVVVHRKGATPAAA
GVLGVIPGSMADPAFVVRGKGNIDSLASASHGAGRCMSRKQAKDTFRINAVKKDLEKKGI
TVLAAGSDEVPGVYKDIRRVMAAQQDLVEVVAQFDPKIVRMCGDGSKAED
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcaagcaactccagaaactcggcgtgccgccgcgttgcgtgaagatcgccacg
caaacgcttagtcgggctgcgcagcaggggaccgggtttggactcaagggcaagcaggcc
aagcaactggtggctgccgtgctcgatagcccgcaggcttatctgcacgattcggtgtgg
ggcgagttcgcgcgggagctgctgacgaaagacatcgagccacaggccgagccgatcacc
tatcgaacttggggcgacgaaatcgaccactcggcccacgcccagatgcggcaggcgtgt
cgcgtgcccagtgcggtcggcgcggccctgatgcccgacgcccacgtcggttacgggctg
ccgatcggtggggtgctggcgtgcgagaacgcggtgattccttacgcggtgggagtcgac
attgcttgccgcatgaagctctcggtgcttgacttgcctgccgactcgctagcgaagcgt
cgcaatctgttggaagaagccttgctcggcggcacgcgtttcggcgtgggcatcgagcac
aagcctcgccagcagcacgaggtgctcgatcgcgactggaaagtgacctacatcacgcat
cagaagaaagataccgcttggaagcagcttggcaccagcggttcgggcaatcacttcgtg
gagtttggtttgttgtcgctcgccgaacgagacgacgagttgaacctcgaccccggcgag
tacctggccttactgtcgcatagcggaagtcgcggggcgggcgcggcggtgtgcaactac
tacagtcagatggctcaacggatgatgccgcctggttgcaaggagctggggcatctcggg
tggttgtcgctcgacaccgaagcaggtcaggagtactgggcggccatgaacttgatgggc
gagtacgcggccgccaaccacgcggtgattcatcggctggtggcaaagctggccggcgcc
caggtgattgcgggcgtcgagaatcatcacaacttcgcctggaaagagtaccacgaggtc
cctggcaagggacgccgcgaagtggtcgtgcatcgcaagggtgctacgcctgccgcggcc
ggcgtgctgggggtgatccccggttcgatggccgacccggcgttcgtcgtgcgcggcaag
gggaacatcgacagcctagcaagcgcctcgcatggtgcgggacgctgcatgagtcgcaag
caggcgaaggatacgtttcgcatcaatgcggtgaagaaggatctggagaagaaggggatt
accgtgctcgcagccggcagcgacgaagtgcccggcgtgtacaaggacatccgccgggtg
atggccgcccagcaagatttggtggaggtagttgcccagttcgaccccaaaatcgttcgt
atgtgcggcgatggtagcaaagcggaggattaa
DBGET
integrated database retrieval system
