Aquimarina muelleri: ACSTS3_08540
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Entry
ACSTS3_08540 CDS
T11519
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amue Aquimarina muelleri
Pathway
amue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSTS3_08540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amue03019
]
ACSTS3_08540
03009 Ribosome biogenesis [BR:
amue03009
]
ACSTS3_08540
Enzymes [BR:
amue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACSTS3_08540
Messenger RNA biogenesis [BR:
amue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACSTS3_08540
Ribosome biogenesis [BR:
amue03009
]
Prokaryotic type
rRNA helicases
ACSTS3_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XYH68627
LinkDB
All DBs
Position
2051726..2053489
Genome browser
AA seq
587 aa
AA seq
DB search
MNKFEALGLSEAIVKAVNEMGFETPSEVQEKAIPILLNEDTDIVALAQTGTGKTAAFGFP
LIEKIDSKSRITQGLILSPTRELCLQITNEFKNYSKFIPGLHTVAIYGGASITDQAKQIK
RGAQVIVATPGRMQDMINRKMVDISQISYCILDEADEMLNMGFYEDINAILSHTPKEKNT
WLFSATMPKEVSTIAKRFMRNPVEITVGHKNTGSKNVSHEYYVVNSRDRYAALKRLSDAN
PDIFSVIFCRTKRDTQKVAENLIEDGYNAAALHGDLSQNQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVSKSEVRKIKSVERI
IKQNFEKKDIPSGEEICQVQLFHLANDISKAEINHEIDSYLPSINEVLEDFSKEELIKKF
FSVEFSRFHNYYKKSKDLNTSNERESSFGNDNGSTRYFINVGEKDGFDWMTLKDFLKDIL
EIGSDSLSRVDVKESFSFFNTNAEHQERVLSVFEDFKMEGRKVNVEISKDSGRNRGGKRR
RDNNGGGFKGKRKSDGFKPRSKSRFESSDDRNSGGGRRDKRKRSDRK
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaagcattaggccttagtgaagccatcgtgaaggcggtgaatgaaatg
gggtttgaaaccccaagtgaagtacaagaaaaggcaatacctattttgctaaatgaagat
actgatattgttgcattggcacaaacaggaactggaaaaacagctgcttttggctttcct
ttaattgaaaaaatagatagtaagagcaggattacccaaggtttaatcctttctcctacc
cgtgaactttgtttacaaattactaatgagtttaaaaattactctaaatttatccctgga
ttacataccgtagctatatatggtggtgccagcataacggatcaagcaaaacaaataaaa
cggggagcccaagttatcgtagcaacaccagggcgaatgcaggatatgattaatcgtaaa
atggtagacatttctcagattagttattgtattctggatgaagcagatgaaatgcttaac
atgggattctatgaagatattaacgctattttatcgcataccccaaaagaaaaaaacact
tggttattttcggctactatgccaaaagaagtatctactatcgctaaacgttttatgcgt
aatcctgtagaaattacagtaggtcataaaaacacaggatctaaaaatgtttcacatgaa
tattatgtagtaaactcaagagatagatacgctgcattaaaacgattatcagatgctaac
cctgatatcttttctgttatattttgtcgtaccaaaagagatacacaaaaagtagctgaa
aatcttattgaagatggatacaatgctgcagctttacatggtgatttaagccaaaaccaa
agagatttggttatgaaaagctttagaaaccgtcaaatacaaatgctggttgctacagat
gtagctgctcgtggtattgatgtagatgatataacacatgttataaattatcaacttcct
gatgaaatagaaacctacactcaccgtagtggacgaactggtcgtgcaggaaaaagtgga
gtttctatggtaattgtttctaaaagtgaagttagaaaaataaaatctgtagagcgaatt
atcaaacagaattttgagaaaaaagatatcccaagtggcgaagaaatttgtcaagtacaa
ctttttcatttggcaaatgacatcagtaaagccgagataaaccatgaaatcgatagttac
ttaccttccattaatgaggttttagaagatttttctaaagaagaattaattaaaaaattc
ttttcagtagaattttctcgttttcataattactacaaaaaatctaaagatttaaatacc
tctaatgaacgagaaagtagttttggcaacgataacggtagcactcgttattttattaat
gtaggagaaaaagatgggtttgattggatgacattaaaagattttctaaaagatattttg
gaaataggaagtgattcattaagccgagtagatgtaaaagaaagcttttcatttttcaac
acaaatgcagaacatcaggaacgtgttctttctgtttttgaagatttcaaaatggaagga
agaaaggttaatgtagaaatttctaaagattctggcagaaatagaggaggaaaaagacgt
cgagataataatggaggtggctttaaaggaaaacgcaaaagtgatggttttaaaccaaga
agtaaaagccgttttgaatctagcgatgatcgaaatagcggaggaggcagaagagataaa
aggaaacgaagtgaccgtaaataa
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