Achromobacter mucicolens: PE062_02950
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Entry
PE062_02950 CDS
T08808
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amui
Achromobacter mucicolens
Pathway
amui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PE062_02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amui03019
]
PE062_02950
03009 Ribosome biogenesis [BR:
amui03009
]
PE062_02950
Enzymes [BR:
amui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PE062_02950
Messenger RNA biogenesis [BR:
amui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PE062_02950
Ribosome biogenesis [BR:
amui03009
]
Prokaryotic type
rRNA processing factors
PE062_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WBX89625
LinkDB
All DBs
Position
complement(641455..644529)
Genome browser
AA seq
1024 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEEVKTSFELVEAPATDAPWQPRESEIKSRPEALVKGITPSQPAPVST
PAAPAAAPAAPAAGAGLGGLFKRLVGWLTGGSEPAKPAPAAAEETAKRAAPARGKGRNGH
DGQDRRGERHGSDRNRNRRGEGRGEGAEATEGGRHHVRGNRRSDAERGERNNRGEGRGER
DTPAATQAALASARPEQGPELNGEDTGAGRNRRRGRGRNRREEGQADAPMSEQESMVAAL
AQTVATALPDTKSDAKPAAEAAMDTADADDLSAEAIPGVEGAEGAADPERKRRRRRSRRG
RRSQDEAGLAGSDEQQEDGAEDAGEQQAEGVDAQAAEPVQTAAAEAAPAPAQQVQAPAQP
VQTAAQPEQAPAEPVQAPKAEPVQAAAEPAIEPLTQAAAEPVAQPVQTAPEATPPVAVQP
ASEASVPAAPVQAPVEAPAVEPVVPAPAAAPAAPAPVAPAPAPVAPASAQQPIVVPAAAP
AAKAQALHDVVNAAGLKWVETDPERHAQTQQRIAASYAPVRLGRERKPVTPVSNEPLVQV
ETRH
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgaccttgacatcgagactgccggccgcgaacagcgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctcgaagcttgcttcgtcaactac
ggcgaggaccgccacggctttctgcccttcaaggaagttgcccgcagcttcttcaaggaa
ggcgtcgatgtccgcaccgcccgtatccaggatgccctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacctcgtcctgatgcccaacaacccccgcggcggtggtgtttcgcgc
cgcgtcgagggtgaggaccgccaggaactgcgcgacacgatggagcagcttgacctgccc
cagggcatgagcatcatcgcccgcaccgcaggcatcggccgcaacgtcgaggagctgcaa
tgggacctgtcctatctgctgcagctctggaccgccatcgacggcgccgctcgcgacaac
tccgcgcccatcctgatctacctcgaatccagtctggtcatccgcgcgatccgcgattac
ttctcgccggaaatcggcgagatcctgatcgataccgacgagatcgccgaccaggccacc
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgtgacgac
atccccctcttctcgcgcttccagatcgaacaccagatcgagacggcctactcgcgcacc
gtgcaactgccctcgggcggcgccatcgtcatcgaccacaccgaagcgctggtgtccgtc
gacgtgaactcggcccgctcgacccgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagcggcagacgaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgatgccctccatttcgatcgtgcccgcgtccagatgggcaagatctcgcgcttt
ggcctgatggaactgtctcgccagcgcctgcgccccgccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgatgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggagaacaccgcggcggtccacgcccag
gtgcccgtcgacgtggcgacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcat
caccacatcgagcgcctgcgccacgacgacccccgcctggaagaagtgaagaccagcttc
gaactggtggaagcgcctgccacggacgcgccctggcagccccgcgaaagcgaaatcaag
tcgcgcccggaagccctggtcaagggcatcacgccctcgcagcccgctcccgtctccacg
cccgcagccccggccgcggcacctgccgcgcccgcagcaggcgccggtctgggcggtctg
ttcaagcggctggtcggctggctgaccggcggctccgagcccgccaagcccgcgcctgcc
gccgccgaggaaaccgccaagcgcgccgccccggcccgtggcaagggccgtaacggccat
gacggccaggaccgccgcggtgaacgccacggttccgaccgcaaccgcaatcgccgcggt
gaaggccgcggcgaaggcgccgaggccaccgaaggcggccgtcaccacgtgcgtggcaac
cgccgctcggacgccgaacgcggcgaacgcaacaaccgtggcgaaggccgcggcgagcgc
gacacgccggccgccacccaggcagcattggcgtccgcgcgtcctgaacaaggccctgag
ctcaatggcgaggacaccggcgcaggccgcaaccgccgtcgtggccgtggccgcaaccgc
cgcgaagaaggccaggccgacgcgccgatgagcgaacaggaaagcatggtcgccgcgctg
gcccagacggtcgccaccgcactgcccgacaccaagtcggatgccaagcctgccgccgaa
gctgccatggacaccgctgacgccgacgatctatccgccgaagcgatcccgggcgttgaa
ggcgccgaaggcgcggccgatcccgagcgcaagcgccgccgccgccgcagccgccgtggc
cgccgcagccaggacgaagctggcttggccggcagcgacgagcagcaggaagacggcgcc
gaagacgctggcgagcagcaggccgaaggcgtcgacgctcaagccgccgagccggttcaa
accgcagccgccgaggcagcgcccgccccggcccagcaggttcaagcgccggctcagccc
gtgcagaccgccgcgcagcccgagcaagccccggccgaaccggttcaagcacctaaggct
gaacccgtccaggccgccgctgagcccgcgatcgagcccctgacccaagctgcggctgaa
cccgtcgcgcaaccggtccagacggctcccgaagcgaccccgcccgtcgccgtgcaaccc
gcaagcgaggcttcggtccccgccgcgccggtgcaggcgccggtggaagcgcccgccgtc
gagccggtggtcccggccccggcagctgcgcccgccgcccccgcgcccgtcgctccggcc
cccgcgccggtggctccggccagcgcgcagcagcccatcgtggtgcccgccgctgccccc
gccgccaaggcgcaggccttgcacgacgtggtcaacgccgctggcctgaagtgggtggaa
accgatccggaacgccacgcacagacgcagcaacgcattgctgcctcgtatgcgccggtt
cgcctgggccgcgagcgcaagcccgtgacgcccgtctcgaacgagccgctggttcaggtc
gaaacgcgccactaa
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