Achromobacter mucicolens: PE062_08985
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Entry
PE062_08985 CDS
T08808
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
amui
Achromobacter mucicolens
Brite
KEGG Orthology (KO) [BR:
amui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amui03009
]
PE062_08985 (rlmD)
Enzymes [BR:
amui01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PE062_08985 (rlmD)
Ribosome biogenesis [BR:
amui03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PE062_08985 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
RrnaAD
Methyltransf_31
Methyltransf_23
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_32
LOH1CR12
Motif
Other DBs
NCBI-ProteinID:
WBX90752
LinkDB
All DBs
Position
1942296..1943789
Genome browser
AA seq
497 aa
AA seq
DB search
MSDVLNIESLDLEARGIARRDGKVIFVEGALPGERVTAVTLRRKPSYETARVDEVLHPSS
QRVVPRCPHFGVCGGCAMQHLEPTTQVAIKQRALEDTFWHVGKLRPALILPPLQGPTWGY
RYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLIPLREMIASMSAPD
RMPQIEVALGEGVTALVLRHLLPLTDGDIAILRAFAAKHDVQWWLQAKGPDTVHPLEREH
NDTLSYSMPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLEVQPTDRVADLFCGLGNFT
LPLATQGREAVGVEGSKALTDRAFDAASRHGLGDRTSFATLNLFEVDATWLRSLGYFDRM
LIDPPREGAHAVSQALSDLSYEERPRRIVYVSCNPATLARDAAILVHEGGYVLKSAGVIN
MFPHTGHVESIAVFETLDAQGVLEAKARARERAANAAAEAVAAEQARLAAAAEKAAAKQA
ATEAYEARVAAQAQSGQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgttttgaatatcgaatccctggacctggaagccaggggcatcgcccgccgc
gacgggaaggtcattttcgtggaaggcgccttgccgggcgaacgggtcaccgcggtcacg
ctgcgccgcaagccgtcctacgagacggctcgggtggacgaggtgctgcacccctcgtcg
caacgcgtggtgccccgctgcccgcatttcggcgtctgtggcggctgtgccatgcagcat
ctggaacccaccacgcaggtggccatcaagcagcgcgcgctcgaagacaccttctggcat
gttggcaagctgcgcccggcgctgatcctgccgccgctgcagggcccgacctggggctac
cgctaccgggcgcgcctgtccgtgcgcgtggtgcccaagaagggcggggtgctcgtgggc
tttcacgaacgcaagagcagctacgtggccgacatgcgcgaatgccatgtgctgccccgc
cacgtcagcgatctgctgatcccgctgcgcgaaatgatcgcctcgatgtccgcgccggac
cgcatgccgcagattgaagtggcgctcggcgagggcgtgacggcgctggtgctgcggcat
ctgctgccgctgaccgacggcgacatcgcgatcctgcgcgcctttgcggccaagcacgac
gtgcaatggtggttgcaggccaagggcccggacacggtgcacccgctggagcgcgagcac
aacgacacgctgtcctactccatgccggagttcggcctgcgcatgccgtaccgcccgacc
gacttcacgcaggtgaatcacgccatcaaccgggcgatggtgtcgcgggcgctgaagctg
ctggaagtgcagcccaccgaccgcgtggccgacctgttctgtggcctgggcaatttcacg
ttgccgctggccacgcaaggccgcgaggccgttggcgtggagggcagcaaggcgctgacc
gatcgcgcgttcgacgcggcgtcgcgccacggcctgggcgatcgcaccagcttcgccacc
ctgaacctcttcgaagtcgacgccacctggctgcgcagcctgggctacttcgaccgcatg
ctgatcgacccgccgcgggaaggtgcgcacgcggtgtcgcaggcgctgtccgacttgtcg
tacgaagaacgtccgcgccggattgtctacgtgtcctgtaacccggccacgctggcgcgg
gacgcggccatcctggttcacgaaggcggctacgtgctcaagagcgcgggcgtgatcaac
atgttcccgcacaccggccatgtggaatccatcgccgtgttcgagacgcttgacgcgcag
ggcgtgctggaagcgaaagcgcgcgcccgtgagcgtgcggccaacgcggccgccgaagcg
gtggccgccgagcaagccaggctagccgcggcggccgaaaaggcggcggccaagcaggcc
gccaccgaggcgtacgaggcgcgcgtcgccgcccaggcgcagtcgggccaataa
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