Allobaculum mucilyticum: KWG62_12825
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Entry
KWG62_12825 CDS
T08025
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
amuo
Allobaculum mucilyticum
Brite
KEGG Orthology (KO) [BR:
amuo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KWG62_12825 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amuo03021
]
KWG62_12825 (rpoD)
Transcription machinery [BR:
amuo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KWG62_12825 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UNT97478
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Position
3088485..3089657
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AA seq
390 aa
AA seq
DB search
MISRLNISDEENDRLLEWIRDEQIPVTGLDEEEREEFASELEAREEKAFESSLNNKDETR
LEKELEEELEEDELLESDEDDLSDEEEASGDSASDNADEIAQLEKSFYDNAKNRTSDPVK
MYLREIGQIPLLTAAQEREAAKAYQEEGSKEAKDLLISSNLRLVVSIAKRFINHGLPLLD
LIQEGNCGLIKAVEKFDYTKGFKFSTYATWWIRQSITRAIADQSKTIRIPVHMTETINKL
TRISRQLTQDLGRDPLPEEIAEKLPGMKADKVREIQRIALDPVSLETPIGEEDDSHLGDF
IEDKTSISPTEYTNNQLLKDEISLALETLTKREEEVLQLRYGLIDGQPRTLEEVGQAFSV
TRERIRQIEAKALRKLKQPIRSKRLKDFSH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgatttcccgactgaacatttccgatgaggaaaacgaccgccttctggaatggatccgc
gatgagcagattccagtaaccggacttgatgaagaggaacgtgaagaattcgcctctgaa
ctcgaagcccgggaagaaaaagcgtttgaaagctctctgaacaataaagacgagacccgg
cttgaaaaagaactcgaagaagagctggaagaagatgaacttcttgaatctgatgaggat
gatctctctgatgaagaagaagcatccggtgattctgcatcggacaacgccgatgaaatt
gctcagctcgaaaagtcgttctatgacaacgcaaaaaaccggacaagcgatccggtcaaa
atgtatctgcgggagatcggtcagattccgcttctgacggctgcccaggagcgtgaagcc
gcaaaggcctatcaggaagaaggctccaaagaagccaaggacctgctgatcagctccaac
ctgcgtctggttgtttccattgccaaacgcttcatcaatcatggcctgccgcttctcgac
ctgattcaggaaggcaactgcggcctgattaaagctgttgaaaaatttgactacaccaaa
ggcttcaaattttcgacatatgctacctggtggatccgtcaatcgatcacccgggccatt
gcagatcagtcgaaaacgatccgcattccggttcatatgaccgaaaccatcaacaagctc
acacgcatttcccgtcagctgacccaggatctgggccgcgatccgctgccggaagaaatt
gccgaaaagcttccgggaatgaaagcggacaaagtccgggaaattcagcgcattgcgctc
gatccagtttctctggaaacgccgatcggcgaagaggatgattcgcatcttggcgacttc
atcgaagataaaacgtctatttcgccaacggaatacactaacaatcagctgctcaaagac
gaaatctcgcttgctctggaaacactgaccaaaagggaagaagaagttctgcagctccgt
tacggactgatcgacggacagccccgtacacttgaagaagtcggacaggcattcagcgtc
acccgtgagcgaatccggcagattgaagccaaagcccttcgcaagcttaaacagccaatc
cgctccaaacgcctcaaagacttcagccactaa
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