Akanthomyces muscarius: LMH87_009797
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Entry
LMH87_009797 CDS
T09501
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
amus
Akanthomyces muscarius
Pathway
amus03008
Ribosome biogenesis in eukaryotes
amus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amus00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LMH87_009797
09123 Folding, sorting and degradation
03018 RNA degradation
LMH87_009797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amus03021
]
LMH87_009797
03019 Messenger RNA biogenesis [BR:
amus03019
]
LMH87_009797
03009 Ribosome biogenesis [BR:
amus03009
]
LMH87_009797
03016 Transfer RNA biogenesis [BR:
amus03016
]
LMH87_009797
Transcription machinery [BR:
amus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LMH87_009797
Messenger RNA biogenesis [BR:
amus03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
LMH87_009797
Ribosome biogenesis [BR:
amus03009
]
Eukaryotic type
Pre-60S particles
RNases
LMH87_009797
Transfer RNA biogenesis [BR:
amus03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LMH87_009797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
80896956
NCBI-ProteinID:
XP_056053963
UniProt:
A0A9W8QC29
LinkDB
All DBs
Position
5:complement(<1538189..>1541212)
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AA seq
970 aa
AA seq
DB search
MGIPAAFRWLSNKYPKIISPVVEDRPVVMDDGTEIPVDITRANPNGEELDNLYLDMNGIV
HPCAHPEDKPAPKDEEEMMLEIFKYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF
RSAQEAKEKEDDKQELIKLLKQQNGGDFAAESTEAVAKKAFDNNSITPGTPFMDILASSL
RYWCQYKLNTDPGWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDYDPNTRHVIYGLDA
DLIMLGLATHEPHFRVLREDVFFQDGKARTCKLCGQRGHDAQNCRGDTKEKNGEFDEKDK
PVILKPFIWLHVSVLREYLAAELAIPDLPFRFDLERVIDDWIFMCCFVGNDFLPHLPALE
IREHGIDTLTTIWKRNLPALGGYITKDGHIDLERAQCILDGLALQEDMIFKKRKEQEDRR
EANAKRRRLQNNGAAGRDNRNDGKGLRSGYEDPSRGLALHPIGSIPTAPLRAITHDMIVN
RTGAGDANVANKSAASVLKERLKASRDATAPEAGQNDSENGSAHSAPGKRKISAVEGVDD
STPNDSQGKATPADTTDMPADPVRLWEDGYADRYYQLKFHRDPGDISFRKQVAHAYVEGL
AWVLQYYFQGCPSWEWYYPYHYAPFAADFKEITEANVTFEKGIISRPFEQLMSVLPAASR
DNLPDVFHSLMTNPDSEIIDFYPEEFEVDLNGKKMAWQGVALLPFIEMDRLLAAVQQKYP
LLSDLDMKRNGVGRDVLLLSDSHESIYDEILTNFYSKKQGSAQFQLNPKTSDGLSGYVEK
QEEYVPHGTLHYPLERKSMPDLDYDRSMSVNYDMPKMAHDHKSMLLRGVKMPTPALTRSD
IEVLRGKSSRGGYGGGNRGGRYDPGGHHQFRQNGRGRGQDFGPSRPQSNHYRHGDSRPPP
QQHFQGQGGWQPPQPGSSGFGRGVPPPPPAAHQRGWGSQGFNGSGQNYGSSQSYQSQGGQ
YYRGGWSGHR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcccagctgctttccgatggctttcgaacaagtatcccaagatcatatcgcct
gtcgtcgaagaccgacccgtcgttatggacgatggcaccgaaatacctgtcgacattact
cgtgcgaatccaaacggcgaagagctggacaatctttatcttgacatgaatggaatcgtc
catccctgtgcgcatccagaggataagccagctccaaaagatgaagaagagatgatgctt
gaaattttcaaatataccgaccgtgtggttaacatggtccgaccacgaaagatactcatg
atagcagttgacggtgttgcgccccgcgccaaaatgaaccaacagcgatccagacgattt
cgatcggcgcaagaagctaaagaaaaggaagacgacaaacaagagctgataaagctgctt
aaacagcaaaatggaggtgacttcgctgctgaaagcacagaagcggtggcgaaaaaggcg
tttgacaacaactccattacgccgggcactccttttatggatatactggcaagcagcctg
cgctattggtgtcaatataaactgaatacggaccctggctgggcaaaactgaagatcatc
atctcagacgccaccgtgccaggcgaaggcgagcataagatcatgaactttgtcagatct
caacgagctagcccggactatgaccctaacactcgacatgttatttatgggctagacgct
gatttgattatgctgggacttgcaacccacgagcctcattttcgcgtcctacgtgaggat
gttttctttcaggatggcaaagctcgcacgtgtaagctttgcggtcagcgagggcacgat
gcccaaaactgcagaggcgacacgaaagagaaaaatggagagtttgatgagaaagacaag
ccagtgatactcaaacctttcatctggcttcacgtctctgtactaagagaatacttggcc
gctgagcttgcgatacccgatctgccgttccgtttcgatcttgagcgggttatcgatgac
tggatcttcatgtgctgctttgttggaaacgattttcttccacatttgccagcactggaa
attcgcgaacatggcattgatacacttacaaccatttggaaacgtaatctacctgcactt
ggcggttacatcacaaaggatggccacattgatttggaacgagctcagtgcattttagat
gggcttgcactgcaggaggatatgattttcaagaagagaaaagagcaggaggaccgtcgt
gaagcaaacgcaaaacgtcgccgacttcaaaacaacggagcagcaggacgggataaccgc
aacgatggaaaaggcctcagaagcggatacgaagacccatctcgcgggcttgctctgcac
ccaattgggtcgattccaacagcacccttgagagccatcactcatgacatgatcgtcaat
cgaaccggcgcgggcgacgcaaacgtcgccaacaaaagtgctgctagtgtcctcaaagag
cgcttgaaggcaagccgagatgccacggctcccgaagcaggccagaatgactctgaaaac
ggctcagcacactcggcaccgggaaagcgcaaaatatcagctgtcgaaggggttgacgat
tcaactccaaatgattcccaaggcaaagccactccggctgataccactgacatgccagcg
gacccggtcaggctatgggaggatggatatgccgatcgttactatcaacttaagtttcac
agagatcctggcgacatatcatttcgcaagcaagttgctcatgcttatgttgaaggactg
gcgtgggttctgcaatattactttcaaggctgcccgtcttgggagtggtattatccatac
cattacgcgccgttcgcggctgacttcaaagaaataacagaggccaatgtcacattcgaa
aaaggcatcatttcccggccgtttgaacagctgatgagcgttctgccggccgcttcgcgc
gataatttgccggatgttttccacagtttaatgactaacccggatagtgaaatcattgat
ttctatcccgaagagttcgaggttgacttgaacgggaagaagatggcatggcagggagtt
gcattgctaccttttattgagatggaccgccttctggcagctgtgcaacagaagtatccg
cttctaagcgacctagatatgaagcgcaatggcgttggaagggacgttttgttgctatca
gatagccatgagagcatttacgacgagatcttgacaaacttttactccaaaaagcaaggc
tctgctcaattccaactcaatcccaagacgagtgacggactatccggctacgttgagaag
caagaagagtacgtgccacacggtacgctgcactatcccctcgaacgcaagtccatgccg
gatttagactatgatcgctccatgagcgttaactacgatatgccgaaaatggcccatgat
cacaagtcgatgctcctgcgtggcgtcaaaatgccgacccctgcactcacgcgaagtgac
atcgaggttttgagaggcaagtcatcgcgagggggttatggtggcggcaaccgcggaggt
cgctatgaccctggtggacatcatcaattcagacagaacggaaggggcaggggtcaagac
ttcggccctagccgtccccagtcgaaccattataggcacggcgattcgcgtcctccgcct
cagcagcatttccagggacagggaggctggcagcctccccaacctggctcttctggtttt
ggaaggggcgttccgccgccgccacctgcagcacaccaacgaggctggggttcccaaggc
ttcaacggtagtggtcaaaactacggctcaagtcagagctaccagtcgcaaggcggccag
tattaccgtggtgggtggagcggtcaccggtaa
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