KEGG   Acidiphilium multivorum: ACMV_09500
Entry
ACMV_09500        CDS       T01446                                 
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
amv  Acidiphilium multivorum
Pathway
amv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACMV_09500 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amv03019]
    ACMV_09500 (rnjA)
Messenger RNA biogenesis [BR:amv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ACMV_09500 (rnjA)
SSDB
Motif
Pfam: Lactamase_B Lactamase_B_2 RMMBL RNase_J_C Xan_ur_permease
Other DBs
NCBI-ProteinID: BAJ80297
UniProt: F0J641
LinkDB
Position
complement(1080636..1082282)
AA seq 548 aa
MNEISKGLSFTPLGGTGEIGMNLNVYGLDGDLLVVDCGMGFAGPEAPEAELLVPDPAFLA
ANRDRIAGLVITHAHEDHIGGIARIWDALRCPVYATPFAAALIRYRLGEAGLLRSVRITE
IQPGAAFEVGPFALRYIRMSHSTPESQALVLTTKYGTVLHTGDWKLDPEPLIGPPTDEAA
LEALGDAGVLAMICDSTNALVEGHSGSEATVRRSLTSLIAGLRGRIVVTCFASNIARIDT
VVKAAAAAGRHVALVGRSLGKYVEAAQEAGYLADLPDFVPEDEVGAIPDDSLLILATGSQ
GEKRSALARIAADTHRNVALGEGDTVIFSARVIPGNERAIGAVQDELVRAGVNVMTDDDH
MVHVSGHPARDELRRLYRLVRPKYLVPTHGEWRHMAAQADLAEAAGISTFLLEDGDVLRL
APEPPQVVDSVPVGRLAVDGDRLVPMQGGVMAARRRMMLNGVVVASIAVDRAGKVKGGAQ
IAAPGLFEADDHALGALAEDFVATFEDLPANLRTDRNAVKEAAQAALRRALGRRFGKRPM
VEVHVLHI
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgaacgagatcagcaaggggctgagtttcaccccgctcggcggcaccggcgagatcggc
atgaacctgaacgtctacgggctggatggtgatctgctggtggtcgattgcggcatgggc
ttcgccggaccagaggcgcccgaagcggagttgctggtgcccgacccggcgtttctggct
gccaaccgggaccgcatcgccggcctggttatcacccatgcgcacgaggaccatatcggc
ggcatcgcgcggatctgggacgcgctgcgctgcccggtctacgcaacgcccttcgccgcg
gcgctgatccgctaccggctcggcgaggccgggctgctgcgcagcgtgcgcatcaccgaa
atccagcctggcgcggccttcgaggttggcccctttgcgctgcgctatatccgcatgtcg
cactcaacgccggagtcgcaggcactcgtcctcaccacgaaatacggcaccgtgctgcat
acgggtgactggaaactcgatccggagccgctgatcggcccaccgaccgacgaggcggcg
ctcgaggcgctgggcgatgcgggcgtgctggcgatgatctgcgattcgaccaatgcgctg
gtcgaggggcattccggctcggaagcgaccgtgcgacgcagcctgacgagcctgatcgcg
gggctgcgcggtcgcatcgtcgtcacctgtttcgcgagcaacatcgcccggatcgatacg
gtggtgaaggccgccgccgccgccggccggcatgtcgcgctggtgggacgcagcctcggc
aaatatgtcgaggcggcgcaggaagcgggctatctcgccgacctgccggatttcgttccc
gaggacgaggtcggcgccattccggatgacagcctgctgatcctcgccaccggcagccag
ggcgagaagcgctcggcgctggcgcggatcgccgccgatacgcatcgcaacgtcgcgctg
ggcgagggcgataccgtgatcttctccgcccgcgtgatccccggcaacgaacgggcgatc
ggcgcggtgcaggacgagttggtccgcgccggcgtgaacgtgatgaccgacgacgatcac
atggtgcatgtctccggccatccggcccgcgacgaactgcgccggctctaccgtctggtc
cgtccgaaatatctggtgccgacccatggcgaatggcgccacatggcggcgcaggccgat
ctggccgaggcggccggcattagcacgttccttctggaggatggcgatgtgctgcgcctc
gcgcccgaaccgccgcaggtggtcgacagcgttccggtcggccggctcgcggtggacgga
gaccggctggttccgatgcagggcggcgtaatggccgcgcgacggcggatgatgctcaac
ggcgtcgtggtcgccagcatcgcggtcgaccgcgccggcaaggtgaagggcggggcgcag
atcgccgcgccaggcctgttcgaagccgatgatcatgcgctcggcgcgctggccgaagac
tttgtcgcaaccttcgaggacctgccggccaacctgcggaccgaccggaatgcggtgaag
gaggcagcgcaagcggccctgcgccgcgcgctcgggcggcgtttcggcaaacggccgatg
gtcgaggtgcatgtcctgcacatatga

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