Anaplasma marginale Dawn: U370_00460
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Entry
U370_00460 CDS
T02898
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amw
Anaplasma marginale Dawn
Pathway
amw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U370_00460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amw03400
]
U370_00460
Enzymes [BR:
amw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U370_00460
DNA repair and recombination proteins [BR:
amw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U370_00460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGZ79408
LinkDB
All DBs
Position
complement(102214..105672)
Genome browser
AA seq
1152 aa
AA seq
DB search
MFSVLVERHRSARGPLLGLVRHQRVFVGVHVGSLEVITGVAPEFGDMLMAQMCMEDRHTS
FVFVVQEGTSLAHLAKTLKFFDRERDVFILPKWDSIPHKGVSPSSLVMATRMKCLLDVSN
AKAPYVMLTTSGAVAQKVLPAHSVASAAITVAPGDGLSMDALVQHLVACGYTQSSAVREV
GSFAVRGEIVDIFQPIDNKPTRIDFCYDAVESIRYFDLDTQITDGGALPSLVIYPASEVI
KTEENLNRFYTRYMQQYPNPDPAFAEAMLSRQKCMGEEQWLPLLQADELSTIFDYVPNAK
LVLAEQASEEVLRRLEGAQEEDYTAQSATGKSALFLDLQGYIQITRSFHKAIFCRFDATS
ENNLWEHQQVICSSSNIGAVPNFRLLAQEQKADVFAVAADYINSAHKTLILACYSEGSLL
YFIDKFKAHGIHISRVHEYAGPIGAFNAAVLPTSCDVVTHDFIVITEYSLLKRQCAAGRS
SGTVVSEDTCLAVGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNNDKFFVPVEDI
DLITKYGTNTDVVLDKLGSTSWQERSAKLKKRIKDIAQTLLHSEAMRVLAEGNKFLANQR
YLDFCKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINED
PAKQVAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALENGDINIII
GTSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLS
GIKNLSVLRTPPMGRMAVDIAIIQYDGNIIKTAILDEVSRGGRVFFTCPFISDIDGVLAD
LQKLVPNVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNA
DMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQ
DMDMRGFGNLVGEEQSGNIKEVGIELYHKMLEEAIAACQEQPHIQAGCHSVKVGVDANVR
IPESYIRELDLRIRVYKKISSLKTAEEADTCFVELVNRFGAPPPEVMNLLNVMRIKQLCS
ALGIQEVTQAKRHVTFSLSQGTAAYSGMLKHIIDNHDLFTICDHSIRMSVPKASQNQILE
YILSHLVCMAAA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgttttctgtgctcgtggagcgtcaccgtagtgcgcgtggcccactgttggggttggtt
cgtcatcagcgcgtgttcgtaggcgtacacgtgggctctcttgaagtaatcaccggcgtt
gctccagaatttggagacatgctcatggcccagatgtgcatggaagatcggcacacgtcg
tttgtgtttgtcgtacaggaaggcacatccttggcgcatttggcaaaaaccctgaagttt
ttcgaccgggagcgcgatgtgtttatcctgcccaagtgggattccattccacacaagggg
gtctcacccagtagcctggtcatggcaaccaggatgaagtgtttgcttgacgtttccaat
gccaaggccccgtacgtaatgttaacaacctccggcgcagttgcgcagaaagtgctgccg
gcacactccgtggccagtgccgccataacagttgcacctggcgacggtctgtctatggat
gcgctggtacaacatctggtggcatgcggatatacgcaatcttccgcggtgcgcgaagtg
gggagctttgcagtacggggggaaatcgtcgatattttccaaccaatagataacaagccc
accaggatagacttctgctacgatgctgttgagtctatcagatatttcgaccttgatacg
caaattacggatggaggcgcgttaccaagtttggtcatctatccagcatctgaagtaata
aaaaccgaagaaaacttaaatcggttctacacaaggtacatgcagcagtatccaaatccc
gatccggcatttgctgaagccatgctttccaggcaaaaatgcatgggagaggagcagtgg
ttgccgctgctgcaggcagatgagctgtcaaccattttcgattatgtcccaaacgcaaaa
ctagtgcttgctgagcaggcttcggaagaagtattgaggcgcttggaaggggcgcaggag
gaggattatacggcacaatctgccacaggaaaaagcgctttgtttttggatttacaaggc
tacatacaaattacacggagctttcacaaggccattttctgccgctttgatgcaacatca
gaaaacaatctctgggagcatcaacaagtcatatgctcttccagcaatattggcgctgtg
ccgaatttcaggttgctagcacaagaacaaaaggctgacgtattcgcggtggccgcggat
tatattaactccgcccataaaactctaatcctcgcctgctactctgaaggatcgctgcta
tatttcatcgacaagtttaaagcacatggcatacacatatccagagtgcatgagtatgca
ggccctataggcgcgttcaacgcggctgtgctaccaacaagttgtgacgttgtaacacac
gactttattgtgataacagaatacagcctgttgaaacgtcaatgcgcggccggtcgctcc
tctggcacggtagtcagtgaagacacctgccttgcagtaggagacgtagtagtacacaag
gactacggcgttggcatatttaatgcgctacgcacgctcagtgtgtgcggacatttacac
gactttgtcgaaatcctctaccgcaataacgacaaattcttcgtcccggtggaagatata
gacttgatcacaaaatacggcaccaataccgacgtcgtcctggataaactcggcagcacc
tcatggcaggagcgcagcgccaaactcaagaaacgcatcaaagatatcgctcaaacgttg
ttacactcagaagcaatgcgcgtacttgcggaaggcaataagtttcttgcaaatcagagg
tacttggacttttgcaaagagtttccatacgtagaaaccgaagaccagctcaaagcaata
tcagaagttgaggaggatctcgccagcggcaaggtgatggacaggctcatatgtggagac
gttgggtttggcaagacggaagtcgcactgcgcgcggcatttctagtcatcaacgaagat
ccggccaagcaggttgccgtaatcgttcccacaaccctactatgcaggcagcatcttgcg
gcattcagagagagatttcaaaactacgatatcaacgttcagcagcttgcacgatcatcc
gccacgcaaaagtctaaggtaaaaaaggcgctcgaaaacggggatatcaacataatcata
ggtacgagtgcgcttctcgcagaagatataagattcctagacttgagcttgctcattatt
gatgaagaacaacacttcggcgtacaacagaaagaacagctcaaaaagctcaggaatgat
gtgcacgttctatccttatccgcaacaccaattccccgaactctgcacatgtcgctctcc
gggataaaaaacttgagcgttctcaggaccccacccatggggaggatggccgtagatatt
gccatcatacagtacgatggcaacatcataaaaaccgcaattctagatgaagtcagccgc
ggtggcagagtgttcttcacctgcccatttatttctgacattgatggcgtgttggcggac
ctacaaaaactggtcccaaatgtgaaggtcgaagtggcgcatggcagaacatctaccagg
gcgctggataagattatgaatgactttttcgatgggaagttctccgtcctcctgacaaca
tccatcatagaaagtggaatagatatacctttcgccaacaccataatagtgcacaatgct
gacatgttcggcttggcacagctgtaccagctcaagggaagggtgggccggagtacgttg
aagggttatgcctacttcatagtgtcaaaaaaggcgctgcccgattcacctggcatgaag
aggctagaagcggtcaggtctctaaatagcgttgggtcgggctttgccctcgccctacag
gatatggacatgcgcggctttggaaatctggtgggggaagagcagtctggcaacataaag
gaagtgggaattgagctgtatcataaaatgctggaagaagccatagcagcgtgccaggag
caaccccacatacaagcgggctgccacagcgtaaaagtgggcgtagacgcaaatgttagg
attcctgaatcttacatcagggagctagatctgcgtataagggtgtacaaaaaaatcagc
agtttgaaaaccgcggaggaagcggatacctgctttgtcgagctagtaaacagatttggc
gcgccaccaccggaggtcatgaatttgctgaatgtaatgcgcatcaaacagctttgctcc
gcactcggcatacaagaggtcacgcaggcgaagcggcacgtcacgttttcactgtcgcag
ggcacagcagcatattcaggaatgttgaagcacataatagacaaccacgatctctttacc
atatgtgaccacagcatcaggatgtcagtacccaaggcatcacagaatcaaatactagag
tatatattgtcccaccttgtatgcatggccgctgcttga
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