Schaalia meyeri: ADJ76_01920
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Entry
ADJ76_01920 CDS
T04027
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amy
Schaalia meyeri
Pathway
amy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADJ76_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amy03019
]
ADJ76_01920
Messenger RNA biogenesis [BR:
amy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ADJ76_01920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF5548
Motif
Other DBs
NCBI-ProteinID:
AKU65860
UniProt:
A0AAP9Y6N6
LinkDB
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Position
432249..433943
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AA seq
564 aa
AA seq
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MKSLYENLSEPAPLEDDALRVIPLGGLGEIGRNMNVLEYRGKLLVVDCGVLFPEETQPGV
DLILPDFSWIEDRMDDVVGLVLTHGHEDHIGAVPYLLKLRGDIPIYGSDLTLAFVAPKLR
EHRLSDPGLTIVAEGERLTVGPFDLEFVSVTHSIPDALAVFVRTGAGNVLITGDFKMDQL
PLDRRLTDLRAFARMGEEGVDLFMVDSTNALVPGFITPEREIGPVLDQVFGEADGGQIVV
ASFASHVHRVQQVINAAAHHGRRVAFVGRSMERNMRIAEEKGYLSIPEGIIVDLKEIGDL
PPSQRVYMATGSQGEPMAALSRMSVGSHRTVRIEPGDMIVLASSLIPGNENSVYRVINDL
TRLGARVVSKENAKVHVSGHASAGELIYCYNIIQPKNVMPIHGEVRHLVGNGQLAVKTGI
SPRNVVLAEDGVTVDLKDGTARVSGIVPCEYVYVDGRSIGEISEDELETRRTLGSEGFIS
IFAVVEHDSGTVLAGPEIRAIGMAEDDDVFEEILPDVTKALTEAAAPGGQDPYVLQQAMR
RVIGRWVARRLRRRPMIVPVVTEQ
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctttgtacgagaacctcagcgagcccgcgcccctggaagatgacgcactgcga
gtgataccgctgggaggtctcggcgagatagggcgcaacatgaacgtcctcgagtaccgg
ggcaagctcttggtcgtggactgtggcgttctcttccccgaggaaacccagccgggcgtg
gacctgatcctgcccgacttttcctggatcgaggaccgcatggacgacgtcgtcggcctg
gttttaacgcacggccacgaggatcacatcggcgccgtgccctacttgctcaagctgcgc
ggcgacatccctatctacggctcggacctgacgctcgcgttcgtggcccccaagctgcgt
gaacaccgcctgagcgaccccggcctcaccatcgtcgcggagggcgaacgcctgaccgtg
gggcccttcgaccttgagtttgtctccgtcacgcactcgatccccgacgcgctcgccgtg
ttcgtgcgtaccggggccggtaacgtgctgatcacgggcgactttaagatggaccagctg
ccgctggaccgccgtctgaccgacctgcgtgccttcgcccgtatgggagaggagggcgtt
gacctgttcatggttgactccacaaacgccctggttcccggtttcattacgcccgaacgc
gagattggcccggttctcgatcaggtgtttggcgaggccgacggcggtcagatcgtcgtg
gcttccttcgcctcccacgtgcaccgtgtccagcaggtcatcaacgcagccgcccatcac
gggcgccgcgtcgcgttcgtggggcgctcgatggagcgcaacatgcgcatcgccgaggaa
aagggctacctgtcgatccccgagggcatcatcgtggacctgaaggagatcggtgatctg
ccgccctcgcagcgcgtgtacatggcgacggggtcgcagggtgagcccatggccgccctc
tcgcgcatgtcggtgggctcccaccgcacggttcgaatcgagccaggcgacatgatcgtg
ctcgcttcgtcgttgatcccgggcaatgagaactccgtgtaccgcgtcatcaacgacctg
acgcggctgggggcgcgcgtcgtgtccaaggaaaacgcgaaggttcacgtctccggtcac
gcgagcgccggggaactcatttactgctacaacatcatccagccgaagaacgtcatgccc
attcacggggaggttcgccacctggtcggcaacggtcagctggccgtcaagacgggcatc
agcccgcgcaacgtggtcctggccgaggacggcgtgaccgttgatttaaaggacggcacg
gctcgcgtgtcgggcatcgttccctgcgagtacgtgtacgtggatggccgctcgatcggc
gagatttccgaggatgagctggaaacccgccgcaccctggggtcggagggcttcatctcg
attttcgcggttgtcgagcacgactctgggactgtgctggcgggccccgagattcgcgcg
atcggtatggccgaagacgatgacgtgttcgaggagatcctgcccgacgtcaccaaggcc
ctcacagaagcggcggctcccggcgggcaggacccgtacgtcctgcagcaggcgatgcgt
cgcgtgatcggtcgctgggttgcgcggcgcctgcgtcgtcggcctatgatcgttccggtg
gttaccgagcagtag
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