Schaalia meyeri: ADJ76_04875
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Entry
ADJ76_04875 CDS
T04027
Name
(GenBank) helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amy
Schaalia meyeri
Brite
KEGG Orthology (KO) [BR:
amy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amy03019
]
ADJ76_04875
Enzymes [BR:
amy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ADJ76_04875
Messenger RNA biogenesis [BR:
amy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ADJ76_04875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
HA2_N
DEAD
AAA_19
AAA_22
AAA_30
AAA_25
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AKU65173
LinkDB
All DBs
Position
1096113..1098731
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AA seq
872 aa
AA seq
DB search
MPALEDLLSCPPDLPVTRALGDIAAAVCPGGCAVVTAPPGTGKTTLLPPAVAVALAGPGA
GGAGSKSGGSPMRVIVTQPRRVAARAAARRIARLLGEDVGGQVGYSVRADSRVSERTRVE
MVTPGVALRRLQRDPELPGVAALIIDEFHERDLDTDLALAFALDVRAALREDLFIALTSA
TLEASSAVRLLRGATGQEPALVDIPGEIYPLDVRYAPPPRGVDAVGAISRDRVGVRREYL
AHVARTIEDTVTGTSGSVLVFLPGVTEIEAVRRSLRLPGLPILALHGQLSATDQDRALSP
ATGRRVILSTSIAESSLTVPGVSVVVDAGLAREPRFDAGRCLSSLVTVPASLARMDQRAG
RAARTGPGMAVRVMDPVDVARRPAQSAPGIATQDLANARLQVASWGTPVTDLALLDAPPT
GTWEAAGQRLASLGAIDRDGAVTALGRTLAALPLDPPLGRALLAASGVLGVPRAARCVAL
LSEDVRAPGADLGGVERRGGREGGDRAQAARVRETEARLKRLASRLPSVKAWEGREAVPG
GDPRPGRGRSREDELALTCALAHPQWIARKRPGSAAYILAGGVGAELPDGSPLEGQEWLA
VSSIDRAPASRHARILAAVPLPEEDALAAGAAMIAERTQASIDKGRLRATRTRTLGAIPL
STAPARTLRGEEATALAADHVASRGLGELGWGKEASSLRERMRALHRAFGAPWPDVSDEA
LAANARTWLAPWGQRLASGTPLASVPMVEVLRSLLPWPHAARLDELAPDKLPIPSGGTRP
IDWSGEHPVLTLRVQQAFGWTRTPRLLDGRMPLVLHLTDPAGRPAAVTSDLTSFWQGPYR
NVRAQLRGRYPKHPWPEDPLRAEPTNRAKRRS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcccttgaggatctgctctcctgcccgcccgacctgccagtcacgcgcgcgctg
ggcgatatcgcggcggctgtttgccccggcggctgcgcggtcgtcacggctcccccgggc
acaggcaagacgacgctgctgcctcccgccgtcgcggtggcgctggcgggacctggtgcg
gggggcgcggggagtaaatcgggtggctcgccgatgagggtgatcgttacccagccgcgc
cgcgtcgccgcccgggccgcagcccgcaggattgctcgcctcctcggggaggacgtgggc
gggcaggtcggttactcggtgcgcgctgactcgcgcgtgagtgagcggacacgggtggag
atggtgaccccgggcgttgcactacgccgcctccagcgcgacccggagttgcccggcgtg
gccgcgctgatcattgacgagttccacgaacgcgatctggacaccgacctggcgctggcg
ttcgcgctggatgtgcgcgcggcgctgcgcgaggatctgttcatcgcgctcacgtcagcc
actctggaggcgtcttccgcggtgcggctgctgcggggcgcgacgggacaagagcccgcg
ttggttgatatcccgggggagatttatccgctcgacgtgcgttacgctcccccgcctcgc
ggtgtggacgcagtgggcgcgatcagccgcgaccgcgtgggcgtgcgccgggagtacctg
gcgcacgtggcgcgcacgatcgaggacacggtgacgggaacgtcgggctccgtcctggtg
ttcctgccgggggtcacagagatcgaggcggtgcgccgcagcctgcgtctgccgggcctg
cccatccttgccctgcacggtcagctgagcgccaccgaccaggaccgagccctatccccc
gcgaccgggcgccgcgtcatcttgtccacgtccatcgccgaatcgtcgctgactgttccc
ggcgtgtccgtcgtggtcgatgcgggcctggccagggagccgcgtttcgatgccggtcgg
tgcctgtcgtccctggtgaccgtgccggcgtcgttggcccgcatggatcagagggcgggg
cgcgctgctcgcaccgggccgggcatggccgtacgcgtcatggaccccgtggacgtcgca
cgcaggcccgcccagtccgcgcccggtatcgccacgcaggaccttgctaacgcgcgcctg
caggtggcctcgtggggcactcccgtgacggacctggccctgttggacgctcccccgacc
ggcacgtgggaggcggcagggcagcgcctcgcgtccctgggcgcaattgaccgggacggg
gcggtcaccgccctcggccgcacgttggcggcgctgcccctggatccgccgctgggcagg
gcgctcctggcggccagcggagtcctgggggtaccccgggcggcgcgctgcgtggctctg
ctgtcggaggatgttcgcgctcccggcgcggatctgggtggcgtggagcgcaggggcggc
cgcgagggcggggatcgggcgcaggccgcgcgggtgcgcgagacggaagcgcgattgaag
cgcctggcgtcgcgcctgccgagcgtgaaggcgtgggagggaagggaggccgtgcccggc
ggcgacccgcgtcccgggcgggggcgttcgcgcgaggatgagctggcgctgacgtgcgcg
ctggcccacccgcagtggatcgcccgtaaacgcccgggctcggccgcgtacatcctcgca
ggtggcgtcggtgccgaactgccggacggttccccgctcgaggggcaggagtggctggcg
gtgtcgtcgatcgaccgcgcacccgcgtctcgacacgcgcgcatcctggccgccgttccc
ctgccggaggaggacgcgctggcggccggagcggcgatgatcgccgagcgcacccaggca
tcaatagacaaggggagattacgtgccacgcgcacgcgaaccctcggcgcaatcccgctg
tctaccgctccggcgcgcaccctgcgcggcgaggaagccaccgccctggcggcggatcac
gtggcatcccgcggactgggcgaactgggctgggggaaggaggcatcgtccctgagggag
aggatgcgcgccctgcaccgggctttcggcgccccctggcccgacgtgtcggacgaggcg
ctcgccgcaaacgcgcgaacgtggctggccccgtgggggcagcgtctggcatcgggcact
cccctggcgtccgttcccatggtggaggtcctgcgctctctgctgccctggccacacgcg
gcacgcctggacgagctggctcccgacaagctgccgattccgtccggcggaacccggccg
atcgattggagcggggagcacccggtactcaccctgcgtgtccagcaggccttcggttgg
acgcgcacgccccgcctgctggatgggcgtatgcccctggtgctgcacctgaccgatccg
gccgggcgcccggcggcggtcacctcggatttgacgtcgttttggcagggcccgtaccgg
aacgtgcgcgcgcagctgcgcgggcgctacccgaagcacccgtggcccgaggatccgctg
cgcgcggagccgacgaacagggcgaagaggcggagctaa
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