Amycolatopsis sp. BJA-103: BKN51_00930
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Entry
BKN51_00930 CDS
T05296
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amyb
Amycolatopsis sp. BJA-103
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyb03019
]
BKN51_00930
Enzymes [BR:
amyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKN51_00930
Messenger RNA biogenesis [BR:
amyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKN51_00930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
nSTAND3
NACHT
SLFN-g3_helicase
SelB-wing_3
AAA_30
AAA_16
AAA_23
PhoH
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AUI64151
UniProt:
A0A2N8MGZ3
LinkDB
All DBs
Position
175676..179557
Genome browser
AA seq
1293 aa
AA seq
DB search
MASTTSPLGALRARLPELMSRDEHRLRRRLDGARKARNAEDLAVRIEADIEAAELRVTRR
RDGVPKISFPEELPVSQRKDEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGIRGQ
IGHTQPRRLAARTVADRIASELNTELGEAVGYKVRFTDQSGQDTLVKLMTDGILLAEIQT
DRMLRQYDTLIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPERFSQHFGDA
PIVEVSGRTYPVEVRYRPIIDPDDPDADQDRDQTQAICDAVDELQHEGPGDILVFLSGER
EIRDAADALSKQDLRNTEILPLYARLSSSDQHRVFQRHTGRRVVLATNVAETSLTVPGIK
YVVDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFDARP
EFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRQVTDGVQLLQELGAFDMSDGK
KLTETGRKLALLPVDPRMARMVLEASRNGCVREVMIIAAALSIQDPRERPAEKQQAADEQ
HARFADKTSDFLAYLNLWEYVSEQQKALSTNQFRRLCRNEYLNYLRIREWQDIFSQLRQL
AKPLGITLETTGPADPQRVHTSLIAGLLSHVGLKDPAKGDYLGARGARFSVFPGSALFKK
QPRFVMSAELVETSRLWGRVNARIEPEWVEPLAGHVVKRNYSEPHWERKQGAVMALEKVT
LYGVPLVADRRVNYGRIDPEMSRELFIRHALVEGDWETRHHFFRENRALLDEVEDLENRA
RRRDILVDDETLFDFYEQRVPADVVSARHFDSWWKKARHTEPDLLSFEKTMLINETAGGV
READYPDFWTQGTQTFKLTYQFEPGADADGVTVHIPLPVLNQVTPDGFDWQVPGLREELV
TQLIKSLPKAIRRNFVPAPDHAKLVLSRVGPADGPLLHAAADELEALRGVVIPDDAWQLS
AVPEHLKMTFRVVDVRGKKVSEGKDIEALKRDLSGQVRATISKAADSIERQGLTTPAFGE
LPKVFASKQRGHDVKAYPALVDEGGTVAVRLLDTPGQQEQSMWAGTRRMLRLNLPSPMKF
ITRNLGNSSKLVLNRNPHGSVAALLEDCVDCAVDELVADNGGPRWDEAGFAVLQEKVRAG
LNAGVLDVLTNVEKILRAANDVETRLADTRGPADSLADIRAQLDGLVHKGFVTETGQSRL
KHVVRYLRGIERRLEKLPTEPTRDLQRTGDIAWLRNEYQTALDAVPPGTSSPALREIRWM
IEELRVSFFAQTLGTAHPVSLKRVIKALDDAAT
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacaacttccccgctcggcgccctgcgcgctcgcctgcccgaactcatgtcg
cgcgacgagcaccgcctccggcgccggctcgacggtgcccggaaagcgcggaacgccgag
gacctcgccgtccggatcgaggccgacatcgaggccgcggaactgcgggtcacccgccgc
cgcgacggcgtcccgaagatctcgttccccgaagagctgcccgtcagccagcgcaaggac
gagatcgccgccgccatccgcgaccaccaggtggtgatcgtcgccggcgagaccgggtcc
gggaagacgacccagctgccgaagatctgtctcgaactcggccgcgggatccggggccag
atcgggcacacgcagccgagacggctggccgcgcgcacggtcgccgaccgcatcgcctcg
gaactgaacaccgaactcggcgaggccgtcggctacaaggtccggttcaccgaccagtcc
ggccaggacacgctggtcaagctgatgaccgacggcatcctgctcgccgagatccagacc
gatcggatgctgcggcagtacgacacgctgatcatcgacgaggcgcacgagcgcagcctc
aacatcgacttcatcctcggctacgtcaaacagcttctgccgcgccgccccgacctcaag
gtgatcatcacctcggcgacgatcgacccggaacggttctcccagcacttcggcgacgcg
ccgatcgtcgaggtctccggccggacgtatccggtcgaggtccgctaccggccgatcatc
gaccccgacgacccggacgccgatcaggaccgcgaccagacgcaggccatctgcgacgcc
gtcgacgaactccagcacgaaggccccggagacatcctggtgttcctctccggggagcgg
gagatccgggacgcggcggacgcactgtccaagcaggacctcaggaacaccgagatcctc
ccgctgtacgcccggctctcgtcgtcggaccagcatcgggtgttccagcgccacaccggg
cgccgcgtcgtgctcgccaccaacgtcgccgagacgtcgctgaccgtgccgggcatcaag
tacgtcgtcgacccgggcaccgcccggatctcgcgctacagccatcgcaccaaggtgcag
cgcctgccgatcgagcccgtctcgcaggcgtcggcgaaccagcgcaagggccggtgcggg
cgtacctccgacggtatctgcatccgcctgtactccgaagacgatttcgacgcgcggccc
gagttcaccgatccggagatcctgcggaccaacctcgcgtcggtcatcctgcagatgacc
tcgctcggtctcggcgacatcgcggcgttccccttcgtggagccgccggatcgccgccag
gtcaccgacggcgtccagttgctgcaggaactcggcgccttcgacatgagcgacggcaag
aagctcaccgagaccggccgcaagctcgctctgctcccggtcgacccgcggatggcgcgg
atggtcctggaggcctcgcgcaacggctgtgtccgcgaagtgatgatcatcgccgccgca
ctgtccattcaggacccccgggagcggccggcggagaagcagcaggcggcggacgagcag
cacgcgcggttcgccgacaagacgtccgacttcctggcgtacctgaacctgtgggagtac
gtcagcgagcagcagaaggcgttgtccaccaaccagttccgccggttgtgccgcaacgag
tacctgaactacctgcgcatccgcgaatggcaggacatcttcagtcagcttcgtcagctg
gccaaaccgctcggcatcaccctcgagaccaccggcccggccgatccgcaacgtgtgcac
acgtcgctgatcgccgggctgttgtcgcatgtggggctcaaggatccggccaagggcgac
tacctcggcgcgcgcggggcgcggttctcggtgttcccgggttcggcgctgttcaagaag
cagccgcggttcgtgatgtcggccgaactggtcgagacgtcgcgcctgtggggccgggtc
aacgcgcggatcgaaccggaatgggtcgagccgctcgccgggcacgtggtgaagcggaac
tattccgagccgcactgggagcgcaagcagggcgcggtgatggcgctggagaaggtgacg
ctgtacggcgtcccgctggtcgccgaccgccgcgtcaactacggccggatcgacccggag
atgagccgcgagctgttcatccggcacgcgctggtggaaggcgactgggagaccaggcac
cacttcttccgcgagaaccgcgcgctgctcgacgaggtcgaggatctggagaaccgggcc
cgccgccgagacatcctggtcgacgacgagacgctgttcgacttctacgagcagcgcgtc
ccggcggacgtcgtctccgcgcggcatttcgacagctggtggaagaaggcgcggcacacc
gagcccgatctgctgagcttcgagaagacgatgctcatcaacgagaccgcgggtggcgtg
cgcgaggccgactaccccgacttctggacccagggcacgcagaccttcaagctcacgtac
cagttcgagccgggtgcggacgccgacggtgtcaccgtgcacatcccgctgcccgtgctg
aaccaggtcaccccggacggcttcgactggcaggtccccggcctgcgcgaagaactggtg
acgcagctgatcaagtcgctgcccaaggcgatccggcgcaacttcgtcccggcgcccgat
cacgcgaaactggtgctgtcccgggtcggcccggccgacgggccgctgctgcacgccgcc
gccgacgagctggaggccttgcgcggggtggtgatccccgacgacgcctggcagctttcg
gcggtacccgagcatttgaagatgaccttccgcgtggtcgacgtccgcgggaagaaggtg
tccgagggcaaggacatcgaggcgctcaaacgggatttgagcggccaggtgcgcgcgacg
atctccaaggccgccgacagcatcgagcgccaaggcctgacgacgcccgcgttcggcgag
ctgccgaaggtgttcgcgagcaagcagcgcgggcacgacgtcaaggcgtatccggcgctg
gtcgacgagggcggcaccgtggcggtgcggctgctggacacgccggggcagcaggaacag
tcgatgtgggcgggtacgcggcggatgctgcggctgaacctgccgtcgccgatgaagttc
atcacccgcaacctgggcaattcgtcgaagctcgtgctgaaccggaacccgcacggttcg
gtggcggcgttgctcgaagactgtgtcgactgcgccgtcgacgaactcgtggccgacaac
ggcggtccgcgctgggacgaggccggtttcgccgtcctgcaggaaaaggtgcgcgccggg
ctgaacgccggggtgctggacgtgctgaccaacgtcgaaaagatcctgcgcgcggcgaac
gacgtcgaaacgcggctggccgacacccgcggcccggcggattcgctcgcggacatccgg
gcgcagctggacgggctggtgcacaagggtttcgtcaccgagaccgggcagagcaggctc
aagcacgtcgtccggtacctgcgcgggatcgaacggcggctggagaaactcccgaccgag
ccgacccgcgacctccagcgcaccggcgacatcgcgtggctccgcaacgagtatcagacc
gcgctcgacgcggtgccgcccggaacgtcgtcccccgcgctgcgggagatccggtggatg
atcgaggaactgcgggtcagcttcttcgcccagacactcgggacggctcatccggtctcg
ctgaagcgggtcatcaaggcgctggacgacgccgccacctga
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