Amycolatopsis sp. BJA-103: BKN51_30020
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Entry
BKN51_30020 CDS
T05296
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
amyb
Amycolatopsis sp. BJA-103
Pathway
amyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BKN51_30020
09124 Replication and repair
03420 Nucleotide excision repair
BKN51_30020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyb03021
]
BKN51_30020
03400 DNA repair and recombination proteins [BR:
amyb03400
]
BKN51_30020
Enzymes [BR:
amyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKN51_30020
Transcription machinery [BR:
amyb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BKN51_30020
DNA repair and recombination proteins [BR:
amyb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BKN51_30020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
AUI61991
LinkDB
All DBs
Position
6878458..6880104
Genome browser
AA seq
548 aa
AA seq
DB search
MTDGPLIVQSDKTVLLEVDNSQADDARIAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALTTYSRFPVPQPLLIDIVDTMGRFGRLQIANHPAHGLVMSTIDRAVLEEIL
RHKKISPMLGARIDEDTVIVHPSERGRLKQALLKVGWPAEDLAGYVDGEAHPIELAEDDW
ELRDYQRKAAEAFWAGGSGVVVLPCGAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKRE
LIARTSLTEEEIGEYSGEKKEIRPVTIATYQVVTRKTKGEYRHLDLFDSRDWGLVVYDEV
HLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGWIAP
AECTEVRVTLTDAERLSYATAEAEERYKLAATADTKTKVIKTLVDRHPGEPTLVIGAYLD
QLEMIGDELDAPVIQGATRNKEREELFDAFRRGEIRTLVVSKVANFSIDLPEASVAIQIS
GTFGSRQEEAQRLGRLLRPKGDGRQAHFYSVVSRDTVDTEYAAHRQRFLAEQGYAYRIVD
ADDLLRPM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatggcccgctgatcgtccagtccgacaagaccgtgctcctcgaggtcgacaac
agccaggccgacgacgcgcggatcgccatcgcgccgttcgccgaactggaacgcgcgccc
gagcacgtccacacctaccggatcacgccactggcgttgtggaacgcgcgcgccgcgggc
cacgacgcggaacaggtcgtcgacgcgctgacgacgtactcgcggttccccgtcccccag
ccgctgctcatcgacatcgtggacacgatgggccggttcgggcggctgcagatcgccaac
cacccggcgcacgggctggtgatgtcgaccatcgaccgcgcggtgctggaggagatcctc
cggcacaagaagatcagcccgatgctgggcgcgcggatcgacgaagacaccgtcatcgtg
catccatccgaacgcggtcggctcaagcaagcgctcctgaaggtcggctggcccgcggag
gacctcgcgggctacgtcgacggcgaggcgcatccgatcgagctggccgaggacgactgg
gagctgcgcgactaccagcgcaaggccgcggaggcgttctgggcgggcggatccggcgtc
gtcgtgctgccgtgcggcgcgggcaagaccctggtcggcgcggcggccatggcgcacgcg
aaggcgacgacgctgatcctggtgacgaacaccgtcgccggacggcagtggaagcgtgaa
ctgatcgcgcggacctcgctgaccgaagaggagatcggcgagtactccggcgagaagaag
gagatccggccggtcaccatcgcgacgtaccaggtggtcacgcgcaagaccaagggtgag
taccggcacctggacctgttcgactcgcgggactggggcctggtggtctacgacgaggtc
cacctgctgcccgcgccggtgttccggatgaccgcggacctgcagtcgcggcggcggctg
ggcctgaccgcgaccctggtgcgcgaggacggccgcgaaggcgacgtgttctccctgatc
ggcccgaagcggtacgacgtcccgtggcgcgacatcgaggcgcagggctggatcgcgccg
gcggagtgcaccgaggtccgcgtgacgctgacggacgccgagaggctctcgtacgcgact
gccgaggccgaggagcggtacaagctggcggcgaccgcggacaccaagaccaaggtgatc
aaaacgctggtggaccggcatccgggcgagccgacgctggtcatcggcgcctacctcgac
caactggagatgatcggcgacgagctggacgcgccggtgatccagggcgcgacacggaac
aaggaacgcgaggaactgttcgacgcgttccggcgcggcgagatcaggacgctggtcgtt
tcgaaggtcgccaacttctcgatcgacctgccggaggcttcggtggcgatccagatctcc
gggacgttcggttcgcggcaggaagaggcccagcggctcggacggctgctgcgaccgaag
ggcgacgggcggcaggcgcatttctattcggtcgtctcgcgcgacaccgtcgacacggag
tacgcggcgcaccggcagcgattcctggccgaacagggctacgcgtaccggatcgtggac
gcggacgacctgcttcgcccgatgtga
DBGET
integrated database retrieval system
