Amycolatopsis sp. BJA-103: BKN51_31545
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Entry
BKN51_31545 CDS
T05296
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amyb
Amycolatopsis sp. BJA-103
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyb03016
]
BKN51_31545
Enzymes [BR:
amyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BKN51_31545
Transfer RNA biogenesis [BR:
amyb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BKN51_31545
Prokaryotic type
tRNA splicing ligases
BKN51_31545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
S6PP
Motif
Other DBs
NCBI-ProteinID:
AUI62246
LinkDB
All DBs
Position
complement(7194405..7195595)
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AA seq
396 aa
AA seq
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MYTAVEGSRVPIRMWADPTSVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLLKLRRRIESAVPVGFGLHKTPVNPAK
VHGVGGWDAFWKSFGDLHAGVQELHDRAARQIGSLGGGNHFIEVCLEQGGDDEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDPDLAVFVAGTPEMQAYRRDLFWAQDYAARN
RATMVALVKQALKDVVPQTTFDDAISCHHNYVAEETYDGVELLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNTSSFQSASHGAGRRMSRNKAKKLFTAEDLAAQTAGVECRKDSGV
VDEIPAAYKDIETVIKAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtcgaaggctcgcgggttccgatccggatgtgggccgaccccacgtcg
gtcgaggaccaagccatgcgacagctgcacaacgtcgccaacctgccgtgggtgcacggc
gtcgcggtcatgcccgacgtccattacggcaagggcgcgaccgtcggcagcgtgatcgcg
atgcgcgacgccgtgtccccggccgccgtcggcgtggacatcggctgcgggatgagcgcg
gtgcggacctcgctcaccgccgccgatctgcccgacgacctgctgaagctccgccgccgg
atcgagtcggccgtcccggtcggtttcggcctgcacaagaccccggtgaacccggcgaag
gtgcacggtgtcggtggctgggacgcgttctggaagtccttcggcgacctgcacgccggc
gtccaggagctgcacgaccgcgccgcccgccagatcgggagtctcggtggcggcaaccac
ttcatcgaggtctgcctcgaacagggcggcgacgacgaaggccgtgtctggctgatgctg
cactcgggttcgcgcaacatcggcaaggaactcgccgaacggcacatggccgtcgcgcgg
aagctgccgcacaacgcggacctgccggatccggacctcgcggtgttcgtcgccggtacg
ccggaaatgcaggcgtaccggcgcgacctgttctgggcgcaggactacgcggcgcgcaac
cgcgccaccatggtcgcgctcgtcaagcaggcgttgaaggacgtcgtcccgcagacgacg
ttcgacgacgcgatcagctgccaccacaattacgtcgccgaagagacctacgacggtgtc
gaactgctggtgacccgcaagggcgcgatccgcgcgggttcgggtgacctcgggatcatc
ccgggcagcatgggcaccggttcgtacatcgtgcgcggtctcgggaacacgtcgtccttc
cagtccgcgtcgcacggcgcgggccgccggatgtcgcggaacaaggccaagaagctgttc
accgccgaagacctcgccgcgcagaccgccggggtggaatgccgcaaggactccggtgtg
gtggacgagatcccggccgcgtacaaggacatcgaaacggtgatcaaggcgcagaccgac
ctcgtcgaggtggtcgcgcacctgaagcaggtcgtctgcgtgaagggctga
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