Amycolatopsis sp. BJA-103: BKN51_37390
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Entry
BKN51_37390 CDS
T05296
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amyb
Amycolatopsis sp. BJA-103
Pathway
amyb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BKN51_37390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyb03021
]
BKN51_37390
03400 DNA repair and recombination proteins [BR:
amyb03400
]
BKN51_37390
Enzymes [BR:
amyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BKN51_37390
Transcription machinery [BR:
amyb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BKN51_37390
DNA repair and recombination proteins [BR:
amyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BKN51_37390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
AUI63264
LinkDB
All DBs
Position
8401084..8404995
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDVRQLIADELL
YRELIDRYGEYFTGGMGAEAIQKLAAEFDVSAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQMTGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLTEKAEGAGN
AYSSPAEAIMAYDLKALSLHAPVKIRIIDRQPAKADEAALAEKGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQALIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLVPTGKKAILDEYEGKADQVEKRYQRGQLSHTERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTTRGINMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPALDKLISSGISKVKVRSVLTCESA
VGICATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDRVNVGQQLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEAKNRASVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDRLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSTPGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagctccgcatcggtctcgccaccgccgacgacatt
cgtcagtggtccttcggtgaggtcaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggtgttccttcccgcctcggctacctgctggacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgtgacgcggacatcgaggcacgggcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggaaggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgccggtcgcgagctggaccgtctcgag
gaggtctggacgaccttcaccaagctcgacgtccgtcagctgatcgccgacgagctgctc
taccgcgagctcatcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccgccgagttcgacgtctcggcggaggccgacaacctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccagatgaccgggaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctctaccgccgggtcatcaaccggaacaaccggttgaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactccggccgttccgtcatcatcgtcggcccgcagctgaagctccaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgttcgcgc
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggtcacccggtgatgctgaaccgt
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagttggtcgaaggcaag
gccatccagctgcacccgctggtctgtgaagcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctttccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcggcgaacaacatcctttcgccggcgtcgggccgcccgctcgccatgccgcgtctggac
atggtgaccggtctgttccacctgacccgtctcaccgagaaggccgagggtgccggcaac
gcgtactcctcgcccgccgaagcgatcatggcgtacgacctcaaggcgctgagcctgcac
gccccggtcaagatccgcatcatcgaccgtcagcccgccaaggccgacgaagcggcgctc
gcggagaagggctgggagccgggcaaggcttggctggccgagaccacccttggtcgcgtg
ctgttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cgtcaggccctgatcgtgaacgacctcgccgagcggtactcgatgacgcaggttgcgcag
accctggaccgcctgaaggacgccggtttctactgggcgacccgttcgggcgtcacggtc
gcgatctccgacgtgctggtcccgacgggcaagaaagccattctggacgagtacgaaggc
aaggccgaccaggtcgagaagcggtaccagcgtggtcagctgtcgcacaccgagcgcaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgcgatgatcgtgaagtcgggcgcggcgggcaacatg
acgcaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgaaggcctgtcggtggcggagtacttcatc
gcgacgcacggtgcccgtaagggtctggcggacacggcgctccgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgaggtcgactgt
ggcaccacccgcggcatcaacatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgtgaccagcacgtcgagaccagcgtgtacgcgcggaacctggcgaccgacgcggtcgac
gccaagggcaacgtcgtgctcaacgccggtgacgacatcggcgacccggccctggacaag
ctcatctcgagcgggatctccaaggtcaaggtgcgttcggtgctgacctgcgagtcggcc
gtcggtatctgcgccacctgctacggccggtccatggcgaccggtcagctcgtcgacgtc
ggcgaggccgtgggtatcgtcgcggcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtccaggagctgttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgtgtgcgcatcgaggagagcgagcggttctggaagatcacgctgatcccggacgac
ggcagcgaagagatcgtcttcgacaagctgtccaagcgtcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccgcgtcaacgtcggtcagcagctgctcgaaggcacg
ccggacccgcacgaggtcctgcgggtcatggggccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtgacgatcatcgactccggtgccacggacttc
ctgccgggcgaactgcccgagcggaccaagttcgaggcgaagaaccgtgcgtcggtcgcc
gagggtggcgagccggcttcgggtcgcccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcctcgttccaggagaccacgcgtgttctgaccgac
gcggccatcaacggccgttcggacaggctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtaccgggatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcgcgggtcgccgcttacgcgatcccgtcctacgacgacggctactacaccccg
gatgtcttcggctccaccccgggtgccgcggttccgctggacgattacgacttcggccgc
gacttccgctga
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integrated database retrieval system
