Amycolatopsis sp. BJA-103: BKN51_40460
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Entry
BKN51_40460 CDS
T05296
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amyb
Amycolatopsis sp. BJA-103
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyb03019
]
BKN51_40460
Enzymes [BR:
amyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKN51_40460
Messenger RNA biogenesis [BR:
amyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKN51_40460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AUI63810
UniProt:
A0A2N8MQ12
LinkDB
All DBs
Position
complement(9029941..9032331)
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AA seq
796 aa
AA seq
DB search
MILPDLPVRAVLPELEAALDAHGTAVLVAPPGTGKTTLVPLALDNGEGRVIVAEPRRLAA
RAAAARMASLLGERVGETVGYSVRGDRKVSSSTRIEVVTSGLLVRRVQGDPELAGVSTVL
LDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVAAGRLAALLGDAPVITAHARTY
PVDVSYSPPARGERIETTVVRAIHKALSEGDGDVLAFLPGAGEIARVSGMLGGLDADVLP
LHGRLSAASQDDALRPRARRRVVLSTSVAESSLTVPGVRAVVDCGLSRVPRVDHRRGLPG
LATVRVSAAVAEQRTGRAGREAPGRAYRCWAAHEQGSLPAYPEPEIRTAELARFALELAC
WSTPDGSGLSWWDPPGEGALAAGRALLTTLGATTEDGTVTERGRKMAGLGLHPRLARALL
DGAARTNARSAAEVVALLDSGGTLTDLEAELRRVRDDGRWKSDVRRLTKLVPDGGKASDP
ALVVALAHPERLARRRSAGTPVYLMAGGTAAELPRGSGLADVEWLAVAEATRDPGRAQGI
IRLAAPADEALAVRAAPNLVSTVDEVHWAGGDVVARSVRRLGAIVLSEKPLRSPAPDAIR
AALLDGLRTEGLGLLRWSEDGRRLRERLSFLHRVLGSPWPAVDEAALLSTVDSWLDLGSA
RRRSDLASLDAGAALRGLMPWPEASRLDELAPDRLEVPSGSRIRVDYSGEQPVLAVKLQE
TFGWLATPELAGVPVVLHLLSPAGRPAAVTADLESFWRNGYAAVRADLRGRYPKHPWPED
PLGAAPTRRTTRRGGT
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
gtgatccttcccgatctgccggttcgcgccgtcctgcccgaactcgaagccgcgctcgac
gcccatggcaccgccgtgctcgtcgcgccccctggaaccggcaagaccaccctggtgccg
ctcgcactggacaacggcgaaggccgggtgatcgtcgccgaaccgaggcggctggccgcg
cgggccgcggcggcgcggatggcgtccctgctgggcgaacgcgtcggcgagacggtcggt
tactcggtgcgcggagaccggaaggtgtcgtcttcgacacggatcgaagtggtcacctcg
ggtctgctggtccggcgggtgcagggcgatcccgaactggccggggtgtcgaccgtcctg
ctcgacgaatgccacgagcgccacctcgacgcggatctgctgctcgcgctgctgttggac
gtgcgcgccgggctgcgggacgacctgcgcctgctcgcgacgtcggccaccgtggccgcc
ggacggctggcggccctgctcggggacgcgccggtgatcaccgcgcacgcgcgaacctat
ccggtcgacgtctcgtactccccgcccgcacgtggcgagcggatcgagacgaccgtggtc
cgggcgatccacaaagcactgtccgaaggagacggtgacgtcctcgccttccttcccggc
gccggtgaaatcgccagggtcagcggaatgctcggcggcctggacgcggacgtgctgccc
ctgcacgggcggctttcggcggcgagccaggacgacgcgctgcgcccgcgtgcccgccgc
cgggtggtgctctcgacgtcggtcgccgagtccagcctgaccgtgccgggtgtccgcgcg
gtggtggactgcggcctgtcccgggtcccccgcgtcgatcaccggcgcggactgccgggg
ctggcgacggtccgcgtttcggccgcggtcgcggaacagcgcaccggccgggccgggcgc
gaggcgccggggcgcgcgtatcggtgctgggcggcgcacgagcaaggttccctgcccgcc
taccccgaacccgagatcaggacggcggaactggcgcgtttcgcactcgaactcgcgtgc
tggtccactccggacggctccggcctctcctggtgggacccgccgggcgaaggcgcgctg
gccgccggtcgcgcgctgctgaccacgctcggggcgaccaccgaagacggcacggtgacc
gaacgcggccgaaagatggccgggctcggcctgcatccgcgcttggcgcgggcgctgctg
gacggcgcggcgcggaccaacgcgcgttcggcggccgaggtcgtcgcgctgctggacagc
ggcggcacgctgaccgatctcgaagccgaactgcggcgcgtgcgggacgacgggcgctgg
aagtccgacgtgcggcggctgaccaagctggtacccgacggcggcaaggcgtccgatcct
gcgctggtagtggccttggcgcatcccgagcggctcgcacggcggcgttccgcgggcacg
ccggtgtacctgatggccggcggcacggcggcggaactgccgcgcggcagcgggctggcg
gacgtcgaatggctggcggtggccgaagcgacccgcgatcccggccgcgcgcagggcatc
atccggctggccgcccccgccgacgaggccctcgccgtgcgcgcggcgccgaatctcgtt
tcgacggtggacgaagtgcactgggcgggcggggatgtcgtggcgcgttcagtgcggcgg
ctcggggcgatcgtgctgtcggagaagccgttgcgctcccccgcgccggacgcgatccgc
gccgcgctgctggacggcctgcgcaccgaggggctcggcctgctgcgctggtcggaggac
gggcggcgactgcgcgaacggctctccttcctgcatcgggtgctgggctcgccttggccc
gcggtcgacgaagccgccctgttgtccactgtggacagctggctcgatctcggctcggcg
cgccgccggtcggacctggcttcgctggacgcgggcgccgcgctgcgcgggctgatgccc
tggcccgaagcgtcgcgcttggacgagttggcgccggaccggctggaggtgccgtcgggt
tcgcggatccgggtcgactattcgggtgagcagcccgtgctggccgtgaaactgcaggag
accttcggctggctcgcgacaccggagcttgcgggcgtccccgtcgtcctgcacctgctc
tcaccggccggtcggcccgcggcggtcaccgcggatctggagtcgttctggcgcaacggt
tacgcggccgtacgcgccgatctccgcgggcgctatccgaagcatccctggccggaagac
ccgctgggtgccgcgcccacgcggcggaccacgcggcgcggcgggacgtga
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