Amycolatopsis sp. AA4: CU254_01825
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Entry
CU254_01825 CDS
T05278
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CU254_01825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyc03021
]
CU254_01825
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_01825
Enzymes [BR:
amyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CU254_01825
Transcription machinery [BR:
amyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CU254_01825
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CU254_01825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
ATY09354
UniProt:
A0A2K8LLN7
LinkDB
All DBs
Position
365186..369097
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQIRDRAGRELDRLEEVWTTFTKLEPRQLIADELL
YRELIDRYGEYFTGGMGAEAIQKLATEFDVAAEADSLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNENAEGAGN
AYSSPAEAIMAFDRKALSLHAPVKIRVTDRQPAKADEAALAEKGWEPGKPWLAETTLGRV
LFNDLLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDKLKDAGFYWATRSGVTV
AISDVLTPVGKKAILDEYEGKADQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTTRGIMMPIGEDLGDGKIV
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIEKLLSSGISKVKVRSVLTCESA
VGVCATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDHVNVGQQLLEGTPDPHEVLRVMGPREAQMHLTDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEATNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaactttttcgatgagctccggattggcctcgccaccgccgacgacatc
cgtcagtggtccttcggcgaggtcaagaagccggagaccatcaactaccggaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgcgagcgttgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggcgttccgtcgcgccttggctacctgctggacctg
gcgcccaaggacctcgagaagatcatctacttcgctgcttacgtcatcaccggcgtgaac
acggagctgcgccacaacgacctgccgacgctcgaaaacgagatcggcgtcgagcgcaag
aacctcgagacgaagcgcgacgccgacatcgaggcccgcgcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgcgaagtccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagatccgcgaccgtgccggtcgcgagctggaccgtctcgag
gaggtctggaccaccttcaccaagctcgagccgcgtcagctgatcgccgacgagctgctc
taccgcgagctgatcgaccggtacggcgagtacttcaccggcggcatgggcgcggaggcg
atccagaagctggcgaccgagttcgacgtcgccgcggaggccgacagcctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcc
gcgttccaggcgaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggcggccgcttcgccacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctgaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtctgccaagcggatggtggagcggtcgcgg
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggccacccggtgatgctgaaccgc
gcgccgaccctgcaccggctgggcatccaggccttcgaaccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaagcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgtccgctcgccatgccgcggctggac
atggtcaccggtctgttccacctgacccggctgaacgagaacgccgagggcgcgggcaac
gcgtactcgtcgcccgccgaggcgatcatggcgttcgaccgcaaggcgctgagcctgcac
gccccggtcaagatccgcgtcaccgaccggcagccggcgaaggccgacgaggcggcgctc
gcggagaagggctgggagccgggcaagccgtggctggccgagacgaccctgggccgcgtc
ctgttcaacgacctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cggcaggcggccatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
acgctggacaagctcaaggacgccggtttctactgggcgacccgctcgggcgtcacggtc
gcgatctcggacgtgctgaccccggtcggcaagaaggccattctcgacgagtacgagggc
aaggccgaccaggtcgagaagcggtaccagcgcggtcagctgtcccacgccgagcgcaac
aacgagctcgtcaaggtgtggacgcaggcgaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgccatgatcgtgaagtcgggcgccgccggaaacatg
acgcaggtccgttcgctggccggtatgcgtggtctggtgtcgaacccgaagggcgagtac
atcccgcgtccgatcaaggcgaacttccgtgaaggcctgtcggtggcggagtacttcatc
gcgacgcacggcgcccggaagggtctggcggacacggcgctccgtaccgcggactcgggt
tacctgacccgtcgtctggtggacgtttcgcaggacgtcatcgtccgcgaggtcgactgc
ggcaccacgcgcggcatcatgatgccgatcggcgaggacctcggcgacggcaagatcgtg
cgcgaccagcacgtcgagacctccgtgtacgcgcggaacctcgcgacggacgcggtggac
gccaagggcaacgtcgtgctgaacgcgggcgacgacatcggcgacccggccatcgagaag
ctgctctccagcggcatctcgaaggtcaaggtccgttcggtgctgacctgcgagtcggcg
gtcggcgtgtgcgcgacctgctacggccgttcgatggcgacgggccagctcgtcgacgtc
ggcgaggcggtcggcatcgtcgccgcccagtcgatcggtgagccgggcacgcagctgacg
atgcgtaccttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgg
gtcaccgagcttttcgaggctcgcgtgccgaagggcaaggctccgatcgcggacgtcgac
ggccgcgtgcggatcgaggagagcgagcggttctggaagatcaccctgatcccggacgac
gggtcggaggagatcgtcttcgacaagctgtccaagcggcagcggctcgcgaacaccccg
aacggcccgctgggcgacggcgaccacgtcaacgtcggtcagcagctgctcgagggcacg
ccggacccgcacgaggtcctgcgcgtcatgggcccgcgcgaagcgcagatgcacctcacg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtgacgatcatcgactccggggccacggacttc
ctgccgggcgagctgcccgagcggacgaagttcgaggcgacgaaccgggccgcggtcgcc
gagggcggcgagccggcttcgggccgtccggtgctgatgggcatcacgaaggcgtcgctg
accacggactcgtggctgtcggcggcctcgttccaggagaccacgcgagtcctgaccgac
gcggcgatcaacggccgttcggacaagctcgtgggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcatcaacaagtaccggaacatccaggtgcagccgacc
gaggaggcgcgggtcgcggcgtacgcgatcccgtcctacgacgacggttactacaccccg
gacgtgttcggttcgggcaccggcgccgcggttccgctggacgactacgacttcggtcgc
gacttccgctga
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